PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G03980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 119aa    MW: 12944.9 Da    PI: 11.5148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G03980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.3e-0546101455
                      HHHHHHHHHHHH...HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdr...iNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +++e+ rrR++r   ++ ++e Lr+l+P    ++ ++  s  e L +A +YI  Lq
  OMERI05G03980.1  46 SNKEMRRRRMRRcveVRRKMEALRRLVPGgGGGGAAGEDSGEELLFRAADYIARLQ 101
                      56777777777655599************776889999****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-653115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-454116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MVAHATINNG RCDAAAAVAA RSRPAVMPPA TARSNHRAAA CKNSGSNKEM RRRRMRRCVE  60
VRRKMEALRR LVPGGGGGGA AGEDSGEELL FRAADYIARL QVQVKVMQLM VDVLEQTRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-113CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankAP0149611e-113AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637969.11e-48PREDICTED: transcription factor IBH1-like
TrEMBLA0A0E0DMB95e-81A0A0E0DMB9_9ORYZ; Uncharacterized protein
STRINGBGIOSGA019218-PA4e-48(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91112126