PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G24480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 190aa    MW: 19890.5 Da    PI: 9.3677
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G24480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-191363155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr ++ +gr++AeIrdp +   r+r++lg++++ae Aa+a++ a+++l+g
  OMERI04G24480.1 13 PRYRGVRKRP-WGRFAAEIRDPAK---RARVWLGTYDSAEAAARAYDVAARNLRG 63
                     68********.**********843...6*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.8E-141363IPR001471AP2/ERF domain
CDDcd000185.26E-201371No hitNo description
Gene3DG3DSA:3.30.730.109.6E-311472IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-221472IPR016177DNA-binding domain
PROSITE profilePS5103224.0391471IPR001471AP2/ERF domain
SMARTSM003801.0E-351477IPR001471AP2/ERF domain
PRINTSPR003673.7E-101526IPR001471AP2/ERF domain
PRINTSPR003673.7E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVGGEVMCEA AAPRYRGVRK RPWGRFAAEI RDPAKRARVW LGTYDSAEAA ARAYDVAARN  60
LRGPLARTNF PLVSSLPLPS PHYHLPGKAP AAAAPVAGPA CSASSTVESS SGPRGPRPAA  120
TAAAVPRRRV PRPAPPAPDA GCHSDCASSA SVVDDADDAS TVRSRVAAFD LNLPPPLDRD  180
HVDLCTDLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-201072164ATERF1
3gcc_A1e-201072164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066190.0AL606619.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12, complete sequence.
GenBankAL7323400.0AL732340.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete sequence.
GenBankAL7323460.0AL732346.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818H01, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634065.11e-127ethylene-responsive transcription factor 7
SwissprotO803399e-31ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A0E0DJV51e-128A0A0E0DJV5_9ORYZ; Uncharacterized protein
STRINGOMERI04G24080.11e-129(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-21ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]