PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G11450.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 210aa    MW: 21427.5 Da    PI: 9.625
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G11450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-203281255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae+Aa+a++aa+++++g
  OMERI04G11450.1 32 KYRGVRRRP-WGKWAAEIRDP-----HraARVWLGTFATAEDAARAYDAAALRFRG 81
                     8********.**********7.....338************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-323190IPR001471AP2/ERF domain
PROSITE profilePS5103225.623289IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-233290IPR016177DNA-binding domain
CDDcd000181.33E-183291No hitNo description
PfamPF008478.9E-143281IPR001471AP2/ERF domain
SMARTSM003803.8E-353295IPR001471AP2/ERF domain
PRINTSPR003671.0E-113344IPR001471AP2/ERF domain
PRINTSPR003671.0E-115571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MALSEPDLAA ETEAIASAAS RARQVAVPAA RKYRGVRRRP WGKWAAEIRD PHRAARVWLG  60
TFATAEDAAR AYDAAALRFR GGRARLNFPE DAAAADARRA TDAAAAAAVA SSAPAALLES  120
QPGDVADCLD YSRILAGAPE RPTSSTVTDG FFGGGGNGRF LHSWSIGTSP SSSGSGGAGG  180
GGGGGGAPVR PLFHGGNGWE QRGDSAYNGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-223189463ATERF1
3gcc_A6e-223189463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880432.12e-76dehydration-responsive element-binding protein 1C-like
TrEMBLA0A0E0DE961e-142A0A0E0DE96_9ORYZ; Uncharacterized protein
STRINGOMERI04G10400.11e-135(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.18e-17ethylene response factor 110