PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G09500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 192aa    MW: 20347.2 Da    PI: 6.9226
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G09500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.2e-1172146484
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      ++ +s+v    ++v+p++fa      + ++ t    + +grsW +++  ++++    l++GW++F+ +n+L+ gD +vF+l
  OMERI04G09500.1  72 IMCKSHVQPPFQVVVPRSFAPLL---PSRT-TPATLSWRGRSWGMRF--TGGRLIQRLEAGWRGFAVDNDLRLGDGCVFEL 146
                      677899999999********433...3333.44446789********..88888899**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.02E-1466147IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-1566170IPR015300DNA-binding pseudobarrel domain
CDDcd100174.63E-1267169No hitNo description
PROSITE profilePS5086312.15369171IPR003340B3 DNA binding domain
PfamPF023621.1E-870146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MASDPTELRH SSPECSGDAG AEDPAAAAAA LDAAEKSGGD IAEAAPPRPP EPEKVAHHGV  60
LPLLGKPYFT CIMCKSHVQP PFQVVVPRSF APLLPSRTTP ATLSWRGRSW GMRFTGGRLI  120
QRLEAGWRGF AVDNDLRLGD GCVFELLLVV GGGGGGEQER VEFRVQVLRA EIPARIRGRA  180
GGYTSAAPIV ID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1199990.0AK119999.1 Oryza sativa Japonica Group cDNA clone:002-184-H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635251.11e-99B3 domain-containing protein Os04g0386900
SwissprotQ7XLP41e-100Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A0E0DDE41e-135A0A0E0DDE4_9ORYZ; Uncharacterized protein
STRINGOMERI04G08440.11e-118(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]