PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G35630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 175aa    MW: 18763.5 Da    PI: 10.6986
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G35630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-191564255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     +++GVr+++ +gr++AeIrdp     +  +r +lg+f+taeeAa+a++aa  +l+g
  OMERI03G35630.1 15 RFRGVRQRP-WGRFAAEIRDP-----HlrRRLWLGTFDTAEEAAAAYDAASVRLRG 64
                     69*******.**********8.....556**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.04E-171472No hitNo description
SuperFamilySSF541712.16E-201572IPR016177DNA-binding domain
SMARTSM003807.9E-321578IPR001471AP2/ERF domain
PROSITE profilePS5103222.6421572IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-281573IPR001471AP2/ERF domain
PfamPF008473.7E-121564IPR001471AP2/ERF domain
PRINTSPR003672.2E-101627IPR001471AP2/ERF domain
PRINTSPR003672.2E-103854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEAGAGAGEA RPAARFRGVR QRPWGRFAAE IRDPHLRRRL WLGTFDTAEE AAAAYDAASV  60
RLRGSSAATN FASVRCYSLP RELPKPTIPP PEAAVRPITL PIGTAKPTLL PRVKEEGESC  120
GGRVKEEAGG CEVQALAAEP MWTMISGKRK KRSGCGTRVR AFHAVSARVE EVGGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-191671662ATERF1
3gcc_A4e-191671662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8294450.0CT829445.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA045M03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628091.11e-102ethylene-responsive transcription factor CRF5
TrEMBLA0A0E0D8Q31e-120A0A0E0D8Q3_9ORYZ; Uncharacterized protein
STRINGOMERI03G35130.11e-121(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.16e-16ERF domain protein 10