PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G34570.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 294aa    MW: 31263.2 Da    PI: 5.8095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G34570.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08144188554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  OMERI03G34570.4 144 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 188
                      99***********************7.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-15137198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-10137193No hitNo description
PROSITE profilePS5088815.77139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-14141199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-6144188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006364Biological ProcessrRNA processing
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAGQQPQQQG PPEDDFFDQF FSLTSSFPGA APGGRAAGDQ PFSLALSLDA AAAAEASGSG  60
KRLGVGDDAE GGGSKADRET VQLTGLFPPV FGGGGVQPPN LRPTPPTQVF HPQQSKQGGA  120
AVGPQPPAPR PKVRARRGQA TDPHSIAERL RRERIAERMR ALQELVPNTN KTDRAAMLDE  180
ILDYVKFLRL QVKVLSMSRL GGAGAVAQLV ADIPLSVKGE ASDSGGNQQI WEKWSTDGTE  240
RQVAKLMEED IGAAMQFLQS KALCMMPISL AMAIYDTQQT QDGQPVKHEP NTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1044120.0AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633087.10.0PREDICTED: transcription factor UNE12
SwissprotO227681e-75UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0D9ZEF50.0A0A0D9ZEF5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0D8760.0A0A0E0D876_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GUY70.0A0A0E0GUY7_ORYNI; Uncharacterized protein
TrEMBLB8ALB20.0B8ALB2_ORYSI; Putative uncharacterized protein
TrEMBLI1Q5N60.0I1Q5N6_ORYGL; Uncharacterized protein
TrEMBLQ7Y1H40.0Q7Y1H4_ORYSJ; Lipoamide dehydrogenase, putative, expressed
STRINGBGIOSGA013729-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os03g58330.10.0(Oryza sativa Japonica Group)
STRINGORGLA06G0244900.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.35e-54bHLH family protein