PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G34530.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 418aa    MW: 43836.4 Da    PI: 4.7927
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G34530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1422e-13227279557
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                      + +rrkq+NRe+ArrsR RK a + eLe  v +L  eN++L  +l   ++++ 
  OMERI03G34530.1 227 RLQRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKYN 279
                      789***************************************99988888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-17223287IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.392225279IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.2E-10225279No hitNo description
PfamPF001701.2E-10227278IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-9227277No hitNo description
PfamPF124981.8E-51294411IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MERVFSVEEI SDPFWVPPPP PQPPQSAAAA AAQQQGGGGA SGGGGGGNAM NRCPSEWYFQ  60
KFLEEAVLDS PVPNPSPRAE AGGIRGAGGV VPVDVKQPQL SAAAATSAVV DPVEYNAMLK  120
QKLEKDLAAV AMWRASGTVP PERPGAGSSL LNADVSHIGA PNSIGGNATP VQNMLSGPSG  180
GSGSQLVQNV DVLVKQPTSS SSREQSDDDD MEGEAETTGT ARPADQRLQR RKQSNRESAR  240
RSRSRKAAHL NELEAQVSQL RVENSSLLRR LADVNQKYND AAVDNRVLKA DVETLRAKVK  300
MAEDSVKRVT GMNALFPAAS DMSSLSMPFN SSPSEATSDA AVPIQDDPNN YFATNNDVGG  360
DNSYMPDIPS SVQEDEDFVN GALAAGKIGR TASLQRVASL EHLQKRMCGG PASSGSTS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8293750.0CT829375.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI207J16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631619.10.0bZIP transcription factor RISBZ2-like
SwissprotQ7X9A80.0RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLA0A0E0D8680.0A0A0E0D868_9ORYZ; Uncharacterized protein
STRINGOMERI03G33960.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34883878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-35bZIP family protein
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]