PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G33580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 387aa    MW: 41218.5 Da    PI: 7.2605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G33580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.4e-14342382449
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +A+e
  OMERI03G33580.1 342 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDEAIE 382
                      6*************************8.....6************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.47E-12333382No hitNo description
SuperFamilySSF474592.49E-14336382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.751338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-11342382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15342382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-8344387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MPNPSSLLAS PSPPHRNSSS SSSISIISTP ATIQPDAAHG PCSLLTTSKY ALRDTRGSKS  60
SYTRLFCCCC CTAAPKAEQE EETLQQELLL FGLVQVVNFL GGHKNRGMDG NARSAANQTK  120
QIVTDNELVE LLWHNGGVVA QPQAAQARVV SSSGRGQSAS VLTGDDTETA AWFPDTLDDA  180
LEKDLYTQLW RSVTGDAFPA AAAAGPSSHH APPPDLPPPA ARPPMRSGIG SSWTGDICSA  240
FCGSNHIPET AAQRCRDAGA ALPPERPRRS STHDGAGTSS SGGSGSNFGA SGLPSESASA  300
HKRKGREDSD SRSEDAECEA TEETKSSSRR YGSKRRTRAA EVHNLSERRR RDRINEKMRA  360
LQELIPHCNK TDKASILDEA IEIRNST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333350KRRTRAAEVHNLSERRRR
2346351ERRRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8290140.0CT829014.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI232P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633322.10.0PREDICTED: transcription factor PIF5 isoform X3
TrEMBLA0A0E0D7R00.0A0A0E0D7R0_9ORYZ; Uncharacterized protein
STRINGBGIOSGA013672-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-21phytochrome interacting factor 3