PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G32220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 314aa    MW: 33971 Da    PI: 5.8711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G32220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-17143192255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr +  +g+WvAeIr p++   r+r++lg+++++e+Aa+a +aa  +l+g
  OMERI03G32220.1 143 KYRGVRLRQ-WGKWVAEIRLPNS---RRRIWLGSYDSPEKAARAFDAAFICLRG 192
                      8*****998.**********933...5*********************999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-26142204IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-19143203IPR016177DNA-binding domain
PROSITE profilePS5103222.207143202IPR001471AP2/ERF domain
PfamPF008471.3E-10143192IPR001471AP2/ERF domain
CDDcd000185.08E-25143204No hitNo description
SMARTSM003808.3E-32143208IPR001471AP2/ERF domain
PRINTSPR003671.0E-8144155IPR001471AP2/ERF domain
PRINTSPR003671.0E-8166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MARTHPKGAE GEVAAASDPA RVTWAPPCGR VELRPPRADT DRRCTAAVAT ITDAAPPLDL  60
AEGAEGEVAA VSDPARATWA PPSSRVELRP PRADADPPQP CRRRPPRRKT EEGGGRQIGA  120
SSSARRPRAL MANGTSPAPV ERKYRGVRLR QWGKWVAEIR LPNSRRRIWL GSYDSPEKAA  180
RAFDAAFICL RGGEAIAGLN FPESPPAVVS CTSDPQEVLA YATSHANRLS SDPTIAQEKE  240
ALVMEETAEQ FSDVVRANAA PLPPPMPPPV QVAGGSFDWS QLPLYSPMTT PTAEHWEEDN  300
VEATTSDNLW SFDF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0D7750.0A0A0E0D775_9ORYZ; Uncharacterized protein
STRINGOBART06G06220.11e-98(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.18e-32ERF family protein