PlantTFDB
Plant Transcription Factor Database
v5.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G23670.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 536aa    MW: 60764.1 Da    PI: 9.0545
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G23670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-14371161097
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      ++  + +++p +f++++ggk   + t++le+++g  + v++  + + ++++l+ GW+ Fv+a+++keg++++F+++++s+    v ++
  OMERI03G23670.1  37 SM--RSMIMPDRFVSHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTLLQCGWEAFVDAHNIKEGESLLFRHIENSRY--EVLIL 116
                      33..44899*****888888..5669***************..*******************************9986655..66665 PP
2B343.84.7e-142463291699
                      EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      lv++ ++a+ h   ++e+ t+tl+ +s  ++W  ++  r  ++ ++l++ W++Fv++n L+e D+++F  ++  ++f+++v+++r+
  OMERI03G23670.1 246 LVISSRYASLHF--PRETATITLQRPSKrKKWYPRFYKRIDKSDHMLRGQWQNFVHDNCLQEEDICLFVPTKGgRNFTFTVHLLRA 329
                      799999999997..456779*****66659******66777777*************************88666*******99986 PP
3B350.15e-164435271498
                      T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + l l+ ++a+++   +k +++tl+l + +g  W+++l +r++ ++   +lt+GW++F+++n+L++gDf++F+l+++++ ++ v++++
  OMERI03G23670.1 443 CGLELSSRYAASYlP-DK-NHQTLVL-QCKGMIWQINLVVRRYTNGkrWFLTAGWRKFAHDNRLRVGDFCLFELKKKKKLTMEVHFIS 527
                      778899999999952.33.3346665.569********774444444489************************99999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-2023121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.12526119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-1727120IPR015300DNA-binding pseudobarrel domain
CDDcd100172.54E-1627117No hitNo description
SMARTSM010193.3E-729119IPR003340B3 DNA binding domain
PfamPF023625.9E-1337115IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-19223329IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-18223330IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-18230328No hitNo description
SMARTSM010195.3E-5230330IPR003340B3 DNA binding domain
PROSITE profilePS5086310.56231330IPR003340B3 DNA binding domain
PfamPF023622.5E-12246329IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-18420523IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.688430527IPR003340B3 DNA binding domain
SMARTSM010193.1E-10430529IPR003340B3 DNA binding domain
CDDcd100172.53E-15440512No hitNo description
SuperFamilySSF1019361.7E-17440530IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-13443527IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAGGNTHRKK SCACCKEYLE HLGGKMRCFL RRMAADSMRS MIMPDRFVSH FGGKIPGTIK  60
LESPNGILYV VEVTECMNKT LLQCGWEAFV DAHNIKEGES LLFRHIENSR YEVLILDSDD  120
CEKVFSCAGI RNTSCVQDKT VDPVDSSGSS SNDTTQSSRS RNTANLTAMC SSSEKSGEDS  180
PSGYEFHESV EPQTPSGSDY VLSRRTYLSE AQKERVVAHI QDIQPEITVF VAVMKKCNLQ  240
SPAPYLVISS RYASLHFPRE TATITLQRPS KRKKWYPRFY KRIDKSDHML RGQWQNFVHD  300
NCLQEEDICL FVPTKGGRNF TFTVHLLRAE ATHYSRDGTD VHKIGSSHNK RNSKMASQVH  360
IKEAPGGDVS SESNKHGVSH ESLESEDSNG PSEPPYILSM RRRLSQLQKK TVEERVRAIQ  420
SEFPVCVATI SKLAGSGGKG KFCGLELSSR YAASYLPDKN HQTLVLQCKG MIWQINLVVR  480
RYTNGKRWFL TAGWRKFAHD NRLRVGDFCL FELKKKKKLT MEVHFISNLQ RYPEVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512518LKKKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072060.0AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629380.10.0B3 domain-containing protein Os03g0619800
RefseqXP_015629381.10.0B3 domain-containing protein Os03g0619800
SwissprotQ6AV210.0Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A0E0D3R20.0A0A0E0D3R2_9ORYZ; Uncharacterized protein
STRINGORGLA03G0243600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-12B3 family protein