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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G23670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 536aa MW: 60764.1 Da PI: 9.0545 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.9 | 1e-14 | 37 | 116 | 10 | 97 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ + +++p +f++++ggk + t++le+++g + v++ + + ++++l+ GW+ Fv+a+++keg++++F+++++s+ v ++ OMERI03G23670.1 37 SM--RSMIMPDRFVSHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTLLQCGWEAFVDAHNIKEGESLLFRHIENSRY--EVLIL 116 33..44899*****888888..5669***************..*******************************9986655..66665 PP | |||||||
2 | B3 | 43.8 | 4.7e-14 | 246 | 329 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 lv++ ++a+ h ++e+ t+tl+ +s ++W ++ r ++ ++l++ W++Fv++n L+e D+++F ++ ++f+++v+++r+ OMERI03G23670.1 246 LVISSRYASLHF--PRETATITLQRPSKrKKWYPRFYKRIDKSDHMLRGQWQNFVHDNCLQEEDICLFVPTKGgRNFTFTVHLLRA 329 799999999997..456779*****66659******66777777*************************88666*******99986 PP | |||||||
3 | B3 | 50.1 | 5e-16 | 443 | 527 | 14 | 98 |
T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + l l+ ++a+++ +k +++tl+l + +g W+++l +r++ ++ +lt+GW++F+++n+L++gDf++F+l+++++ ++ v++++ OMERI03G23670.1 443 CGLELSSRYAASYlP-DK-NHQTLVL-QCKGMIWQINLVVRRYTNGkrWFLTAGWRKFAHDNRLRVGDFCLFELKKKKKLTMEVHFIS 527 778899999999952.33.3346665.569********774444444489************************99999999999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.06E-20 | 23 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.125 | 26 | 119 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-17 | 27 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.54E-16 | 27 | 117 | No hit | No description |
SMART | SM01019 | 3.3E-7 | 29 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-13 | 37 | 115 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.69E-19 | 223 | 329 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-18 | 223 | 330 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-18 | 230 | 328 | No hit | No description |
SMART | SM01019 | 5.3E-5 | 230 | 330 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.56 | 231 | 330 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-12 | 246 | 329 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-18 | 420 | 523 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.688 | 430 | 527 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-10 | 430 | 529 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.53E-15 | 440 | 512 | No hit | No description |
SuperFamily | SSF101936 | 1.7E-17 | 440 | 530 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-13 | 443 | 527 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MAGGNTHRKK SCACCKEYLE HLGGKMRCFL RRMAADSMRS MIMPDRFVSH FGGKIPGTIK 60 LESPNGILYV VEVTECMNKT LLQCGWEAFV DAHNIKEGES LLFRHIENSR YEVLILDSDD 120 CEKVFSCAGI RNTSCVQDKT VDPVDSSGSS SNDTTQSSRS RNTANLTAMC SSSEKSGEDS 180 PSGYEFHESV EPQTPSGSDY VLSRRTYLSE AQKERVVAHI QDIQPEITVF VAVMKKCNLQ 240 SPAPYLVISS RYASLHFPRE TATITLQRPS KRKKWYPRFY KRIDKSDHML RGQWQNFVHD 300 NCLQEEDICL FVPTKGGRNF TFTVHLLRAE ATHYSRDGTD VHKIGSSHNK RNSKMASQVH 360 IKEAPGGDVS SESNKHGVSH ESLESEDSNG PSEPPYILSM RRRLSQLQKK TVEERVRAIQ 420 SEFPVCVATI SKLAGSGGKG KFCGLELSSR YAASYLPDKN HQTLVLQCKG MIWQINLVVR 480 RYTNGKRWFL TAGWRKFAHD NRLRVGDFCL FELKKKKKLT MEVHFISNLQ RYPEVD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 512 | 518 | LKKKKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC107206 | 0.0 | AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629380.1 | 0.0 | B3 domain-containing protein Os03g0619800 | ||||
Refseq | XP_015629381.1 | 0.0 | B3 domain-containing protein Os03g0619800 | ||||
Swissprot | Q6AV21 | 0.0 | Y3982_ORYSJ; B3 domain-containing protein Os03g0619800 | ||||
TrEMBL | A0A0E0D3R2 | 0.0 | A0A0E0D3R2_9ORYZ; Uncharacterized protein | ||||
STRING | ORGLA03G0243600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 1e-12 | B3 family protein |