PlantTFDB
Plant Transcription Factor Database
v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G17430.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 332aa    MW: 36044.7 Da    PI: 10.0631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G17430.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.0001951100154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r++ ++erE+  R ++N+ f eL  +l  +     + + Ka iL+ +++ +++L
  OMERI03G17430.2  51 RKVHKSEREKLKRGHLNDLFGELGNMLEAD----RQSNGKACILTDTTRILRDL 100
                      678899*********************997....57788888998888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.0E-948120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-1148119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.26450100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032259Biological Processmethylation
GO:0008168Molecular Functionmethyltransferase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MKAGNGRGRF LEEAMVPSER GDVATAIRPA AADKLVHGPI SDKKCRKKVP RKVHKSEREK  60
LKRGHLNDLF GELGNMLEAD RQSNGKACIL TDTTRILRDL LSQVKSLRQE NSTLQNESNY  120
VTMERNELQD ENGALRNEIS DLQNELRMRA TGSPGWGHGA TGSPLPVPPS PSAVFPLQQP  180
MQPSPMTTST VFPLQQPLAQ QAVIEPSSAR QPLELKLFLE APPVEDPEPS EDQEAPNNVA  240
RPQPRYPAEA SSWPISLGLP RMEDEQMSAA VWAAASVGAD IHRVGRRLGQ GPGSQGRRLL  300
GVGEPPRRSP LGGRDAARRS AVSRSAAAGA VR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8301390.0CT830139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633301.11e-175PREDICTED: transcription factor bHLH47
RefseqXP_015633302.11e-175PREDICTED: transcription factor bHLH47
TrEMBLA0A0E0D1A50.0A0A0E0D1A5_9ORYZ; Uncharacterized protein
STRINGLOC_Os03g26210.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.33e-29bHLH family protein