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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G17430.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 332aa MW: 36044.7 Da PI: 10.0631 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13 | 0.00019 | 51 | 100 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ ++erE+ R ++N+ f eL +l + + + Ka iL+ +++ +++L OMERI03G17430.2 51 RKVHKSEREKLKRGHLNDLFGELGNMLEAD----RQSNGKACILTDTTRILRDL 100 678899*********************997....57788888998888887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.0E-9 | 48 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.46E-11 | 48 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.264 | 50 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0032259 | Biological Process | methylation | ||||
GO:0008168 | Molecular Function | methyltransferase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MKAGNGRGRF LEEAMVPSER GDVATAIRPA AADKLVHGPI SDKKCRKKVP RKVHKSEREK 60 LKRGHLNDLF GELGNMLEAD RQSNGKACIL TDTTRILRDL LSQVKSLRQE NSTLQNESNY 120 VTMERNELQD ENGALRNEIS DLQNELRMRA TGSPGWGHGA TGSPLPVPPS PSAVFPLQQP 180 MQPSPMTTST VFPLQQPLAQ QAVIEPSSAR QPLELKLFLE APPVEDPEPS EDQEAPNNVA 240 RPQPRYPAEA SSWPISLGLP RMEDEQMSAA VWAAASVGAD IHRVGRRLGQ GPGSQGRRLL 300 GVGEPPRRSP LGGRDAARRS AVSRSAAAGA VR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT830139 | 0.0 | CT830139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104M07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633301.1 | 1e-175 | PREDICTED: transcription factor bHLH47 | ||||
Refseq | XP_015633302.1 | 1e-175 | PREDICTED: transcription factor bHLH47 | ||||
TrEMBL | A0A0E0D1A5 | 0.0 | A0A0E0D1A5_9ORYZ; Uncharacterized protein | ||||
STRING | LOC_Os03g26210.1 | 0.0 | (Oryza sativa Japonica Group) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 3e-29 | bHLH family protein |