PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G17110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 383aa    MW: 40572.1 Da    PI: 5.0424
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G17110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.74.7e-3586185297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                      lfqrlw+eeDeiv+L+++ +f+a++g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ +++g+++sf+++h+q ife+
  OMERI03G17110.1  86 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVDRlRATGQSFSFRSPHEQAIFEI 179
                      79*************************9977778***************************************999****************** PP

           DUF573  92 skkiWg 97 
                      ++ iW+
  OMERI03G17110.1 180 ARGIWR 185
                      *****7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-3087184IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MLPTGGYPSA AAISFPDADV DDDSDDGDFT DAPLIDPSDP TFPNPASSSA AAAAMATPAA  60
AGGGSGSVGG VGSSSGGGGG GERRPLFQRL WTEEDEIVIL RAFAEFTAQR GTAFASHQYD  120
TDPFYEDMRR RLQLDFSKSQ LVEKLRRLKR KYRNCVDRLR ATGQSFSFRS PHEQAIFEIA  180
RGIWRPTSDK HGRDADSDDD ALPDAAAAVP VPAPANGEVR SPSSTRAQQR RGRRRRTADA  240
AAATATAADA SEPPQPYPPA PAPAPVKAED ALPHFFPQGA VAVTATTHGH GVDPASAAAA  300
AAAANAEGGI LAPLFKEMVR AMLTAGMAPP SLEPPAPGIP MEGERWRQQR ILELEVYLRR  360
IDLLQDQVRT ALEELKSTPP ATQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0826440.0AC082644.10 Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence.
GenBankAK2432080.0AK243208.1 Oryza sativa Japonica Group cDNA, clone: J100042A05, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCT8377480.0CT837748.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129A20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632846.11e-151probable transcription factor At3g04930
TrEMBLA0A0E0D1660.0A0A0E0D166_9ORYZ; Uncharacterized protein
STRINGOMERI03G17190.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-33DNA-binding storekeeper protein-related transcriptional regulator