PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G09680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 277aa    MW: 28389.9 Da    PI: 8.1882
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G09680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.28.9e-41371371100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ae
  OMERI03G09680.1  37 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRPDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAE 130
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkee 100
                      l +l+++
  OMERI03G09680.1 131 LTYLQAH 137
                      **99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381274.4E-1311276IPR017394LOB domain-containing protein 18/20
PROSITE profilePS5089123.34836138IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-4037135IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSSGGGASSA LGGGGGGGGG SGGGGGASGG GGGGGGPCGA CKFLRRKCVS GCIFAPYFDS  60
EQGAAHFAAV HKVFGASNVS KLLLQIPAHK RPDAVVTICY EAQARLRDPV YGCVAHIFAL  120
QQQVVNLQAE LTYLQAHLAT LELPSPPPLM PAPPQMPMPA PFSISDLPSS TSVPTTVDLS  180
ALFDPPPQPQ WASPLQQQHH HHQHHHHQQQ QHQLRQPSYA TLARAPSGMT AAAESSGGGG  240
GGGGGDLQAL ARELLDRHRS AVKLEQPPPP PPPHSRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankAC1186720.0AC118672.3 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0078P24, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629413.11e-125PREDICTED: LOB domain-containing protein 30
SwissprotO221311e-72LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0E0CXZ30.0A0A0E0CXZ3_9ORYZ; Uncharacterized protein
STRINGLOC_Os03g14270.11e-124(Oryza sativa Japonica Group)
STRINGBGIOSGA011118-PA1e-124(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.15e-70LBD family protein