PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G09340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 159aa    MW: 16674.2 Da    PI: 4.5313
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G09340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.51.6e-0948703456
          G2-like 34 elmkvkgLtlehvkSHLQkYRla 56
                      lmkv+gLt ++vkSHL kYRl+
  OMERI03G09340.1 48 GLMKVDGLTDDEVKSHLHKYRLH 70
                     58*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-84873IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MVSNAFMPLA TSPAFAKSPE KAATATPLPA AVPDLSLSSP LQLLNRLGLM KVDGLTDDEV  60
KSHLHKYRLH TRRASDGGGG SGGLWMPPPE QYTTLQHSTS QSGSPQGPLQ LTVSSSHAVS  120
ATAGDSCDGG EEEEEEEDDG KSESYSWEMQ NGARASSSS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1361361e-117AC136136.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0071C04, from chromosome 3, complete sequence.
GenBankAP0149591e-117AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698345.12e-59PREDICTED: transcription factor LUX-like
TrEMBLA0A0E0CXS71e-111A0A0E0CXS7_9ORYZ; Uncharacterized protein
STRINGOMERI03G09410.11e-112(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.14e-10G2-like family protein