PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G08560.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 268aa    MW: 28645.8 Da    PI: 8.098
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G08560.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD136.39.3e-12139162225
          zf-LSD1   2 ggCrtlLsYPrGApsVRCalCdtV 25 
                      +gCr+lL+YP+GA+s++Ca+ +tV
  OMERI03G08560.2 139 SGCRNLLMYPAGATSICCAVFNTV 162
                      59*****************86665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.8E-10135165IPR005735Zinc finger, LSD1-type
PfamPF069439.9E-9139158IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0016192Biological Processvesicle-mediated transport
GO:0000139Cellular ComponentGolgi membrane
GO:0030126Cellular ComponentCOPI vesicle coat
GO:0005198Molecular Functionstructural molecule activity
GO:0005488Molecular Functionbinding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVVLYVTFLS KGGGCGEGLS CSMCLLVEAD CCAPIYLTYL PGGVRNVGLC HKLIRERKGD  60
FSCLTVAGIC EASTSDAIGS GSWHGNAGSP CPISNSSCAI YTSQWYGFQL GTARTQLLFE  120
FFSLMLSHDC AILSQLVYSG CRNLLMYPAG ATSICCAVFN TVTAVPAPEQ KNSCNVHENK  180
ERLKGNTNGF KAPQRCARRV DGACTQVARE EVHTEVALSR VSTRLDRGTQ VQKGREQREL  240
LPVPSVPSSP TTARPPPPPP PHGQATVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615091e-108AK061509.1 Oryza sativa Japonica Group cDNA clone:006-309-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0CXF00.0A0A0E0CXF0_9ORYZ; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.38e-13lsd one like 1