PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G05890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 331aa    MW: 35504.2 Da    PI: 5.76
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G05890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19109158255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++G+r+++ +g+W+AeIrdp     + +r++lg+f t+eeAa+a++  +++l+g
  OMERI03G05890.1 109 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTPEEAARAYDVEARRLRG 158
                      69*******.**********72....35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-32108167IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-22109167IPR016177DNA-binding domain
PfamPF008473.0E-12109158IPR001471AP2/ERF domain
PROSITE profilePS5103223.446109166IPR001471AP2/ERF domain
CDDcd000181.53E-28109168No hitNo description
SMARTSM003805.2E-38109172IPR001471AP2/ERF domain
PRINTSPR003674.4E-11110121IPR001471AP2/ERF domain
PRINTSPR003674.4E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MCGGAILAEF IPAPSRAAAA TKRVTASHLW PAGSKNAGGG KSKSKRQQRS FADVDDFEAA  60
FEQFDDDSDF DDAEEEDEGH FVFASKSRVA GHDGRAAVRA ASKKKRGRHF RGIRQRPWGK  120
WAAEIRDPHK GTRVWLGTFN TPEEAARAYD VEARRLRGSK AKVNFPATPA AARPRRGNTR  180
ATAAPPPATV PAAAPPRGLK REFSPPETAL PFFTNGFVDL TTAAPPPPAM MMTSSFTDSV  240
ATSESGGSPA KKARSDDVDS SEGSVGGSDT LGFTDELEFD PFMLFQLPYS DGYESIDSLF  300
AAGDANSTNT DMNAGVNLWS FDDFPIDGAL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-22106166263ATERF1
3gcc_A7e-22106166263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8372580.0EU837258.1 Oryza sativa Japonica Group clone KCS050F04 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630585.11e-173ethylene-responsive transcription factor ERF073
TrEMBLA0A0E0CW920.0A0A0E0CW92_9ORYZ; Uncharacterized protein
STRINGOMERI03G05840.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-27ERF family protein