PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G05880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 331aa    MW: 36579.6 Da    PI: 5.6761
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G05880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-19125175155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr+++ +gr++AeIrdp++    +r++lg++g+aeeAa a+++ +++++g
  OMERI03G05880.1 125 TKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAMAYDREARRIRG 175
                      69********.7*********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-12125175IPR001471AP2/ERF domain
SMARTSM003803.1E-33126189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-28126183IPR001471AP2/ERF domain
PROSITE profilePS5103221.97126183IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-20126184IPR016177DNA-binding domain
CDDcd000183.36E-27127183No hitNo description
PRINTSPR003672.0E-7127138IPR001471AP2/ERF domain
PRINTSPR003672.0E-7149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MCGGAILADF TPARVPRRLT AAELLPVTPT PPAAERRTTR KRKSDVDFEA EFELFEEEED  60
DDDDGDEFEL SDDGDESLAV SCVSSPKSKA PSFSFSSDVS SSSRPRRRVA AAAGRRKASK  120
KKKNTKYRGV RRRPSGRFAA EIRDPKKGRR VWLGTYGSAE EAAMAYDREA RRIRGKGARL  180
NFPRDGEASP RRSNDRPCWT IDLNLPAVAV SDDDDAAMAV DAADADAGSA GHAVAYADQE  240
ASNAVKSKIK QGPYDEQLAS ATPELMEEDA SSSRNRVSMS MALQLQYAAM IAECDREMEE  300
IAAVERDLER RRRQVFERRG HLVRQASLLL D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19123183263ATERF1
3gcc_A2e-19123183263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843TRKRKS
2105122RRRVAAAAGRRKASKKKK
3115133RKASKKKKNTKYRGVRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3048400.0AJ304840.1 Oryza sativa mRNA for ethylene responsive protein (ebp-89 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632275.11e-148ethylene-responsive transcription factor RAP2-12
TrEMBLA0A0E0CW910.0A0A0E0CW91_9ORYZ; Uncharacterized protein
STRINGORGLA03G0058400.11e-151(Oryza glaberrima)
STRINGOBART03G06050.21e-151(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-24ERF family protein