PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G05220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 315aa    MW: 33282.2 Da    PI: 6.3088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G05220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-202776255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr++  +g+WvAeIr+p   +kr+r +lg+f taeeAa a+++a+++l+g
  OMERI03G05220.1 27 EYRGVRQRT-WGKWVAEIREP---NKRTRLWLGSFATAEEAALAYDEAARRLYG 76
                     69****999.**********9...337*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.85E-282686No hitNo description
PROSITE profilePS5103222.552784IPR001471AP2/ERF domain
SMARTSM003801.8E-362790IPR001471AP2/ERF domain
PfamPF008476.9E-142776IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-212785IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-302785IPR001471AP2/ERF domain
PRINTSPR003673.1E-102839IPR001471AP2/ERF domain
PRINTSPR003673.1E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MESYGRKRAW KKGPTRGKGG PQNAACEYRG VRQRTWGKWV AEIREPNKRT RLWLGSFATA  60
EEAALAYDEA ARRLYGPDAF LNLPHLRAAS AAAAHQRLRW LPASAAARGG AAAVPAYGLL  120
NLNAQHNVHV IHQRLQELKN SSSSPTKPPP RTPTRANPPP PPLPTSSPCS TVTNSVGSAA  180
LPPPMSCFQA LEQAMAATAA MESAPCDDDA AVVGFGADKP QLDLKEFLQQ IGVLKADDDG  240
ATGKNGAVHG DDSELADAFG FGGNGEFDWD ALAADMSDIA GGHGGALGAN GGFQIDDLHE  300
VEQFGGCMPI PIWDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162884663ATERF1
3gcc_A2e-162884663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879844.11e-176dehydration-responsive element-binding protein 2E
SwissprotQ10R181e-177DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLA0A0E0CVZ30.0A0A0E0CVZ3_9ORYZ; Uncharacterized protein
STRINGONIVA03G05350.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.14e-43ERF family protein