PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G00460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 297aa    MW: 33946.8 Da    PI: 5.6376
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G00460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.63e-50231491128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lppGfrFhP+deelv++yL++k ++++ ++++  + evd++ +ePwdLp+ +k +++ewyfFs r++kyatg r+nra k+gyWkatgkdk++l
  OMERI03G00460.1  23 LPPGFRFHPSDEELVCYYLRNKQQQQQQTAATSmLVEVDLHACEPWDLPEVAKVGSDEWYFFSWRERKYATGWRRNRASKQGYWKATGKDKPIL 116
                      79********************999996664444***************88888999************************************* PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +   ++ g +ktLvfy+grap+g+kt Wvmhe+rl
  OMERI03G00460.1 117 H--PTVAGARKTLVFYSGRAPNGRKTAWVMHEFRL 149
                      9..7789**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5711179IPR003441NAC domain
PROSITE profilePS5100556.27223179IPR003441NAC domain
PfamPF023651.2E-2624149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDGLISDDSM MMGGELRAIE SRLPPGFRFH PSDEELVCYY LRNKQQQQQQ TAATSMLVEV  60
DLHACEPWDL PEVAKVGSDE WYFFSWRERK YATGWRRNRA SKQGYWKATG KDKPILHPTV  120
AGARKTLVFY SGRAPNGRKT AWVMHEFRLL HHHHHPDPNI QNMQQQEGDD WVLCRVFRKG  180
NNSNGQPLGT SSPPAHHLVE SLISSPAPTI MSDHDRLFTI QLPHHQHSDD EPFFLDDDEQ  240
HQQQLLDLSV LQAPTSFESE QAPGNNGGME INIAEMESFD TTCAALQDAS DYCMQLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-462018112170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704160.0AK070416.1 Oryza sativa Japonica Group cDNA clone:J023051N16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629924.10.0PREDICTED: NAC domain-containing protein 21/22
SwissprotQ84TE62e-61NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0CTU50.0A0A0E0CTU5_9ORYZ; Uncharacterized protein
STRINGLOC_Os03g01870.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169171212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-63NAC domain containing protein 74