PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G35350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 217aa    MW: 22516.7 Da    PI: 7.9346
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G35350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.93.5e-38231231100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrr+C+++Cv+apyf +eq +++fa++hk+FGasn +kll++lp  +r +a+ +++yeA+ar+rdPvyG+v+ i++lqqq++ l+a+
  OMERI02G35350.1  23 PCGACKFLRRRCVPECVFAPYFSSEQgAARFAAIHKVFGASNASKLLSHLPVADRCEAVVTITYEAQARLRDPVYGCVAQIFALQQQVAILQAQ 116
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkee 100
                      l +++++
  OMERI02G35350.1 117 LMQARAQ 123
                      *999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.95122124IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3723121IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAGATAAGAA AAAAAAGTGA GSPCGACKFL RRRCVPECVF APYFSSEQGA ARFAAIHKVF  60
GASNASKLLS HLPVADRCEA VVTITYEAQA RLRDPVYGCV AQIFALQQQV AILQAQLMQA  120
RAQLACGIQS SSHSPVSWPD SGSISALLRQ DMARRAPGGA LDDCFGGGAL LPELMAAGFK  180
DDVAAVQMQQ HCSKAVDAGE LQYLAQAMMR STSNYSQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641870.0AK064187.1 Oryza sativa Japonica Group cDNA clone:002-104-C02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626197.11e-139PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB71e-60LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A0E0CT761e-156A0A0E0CT76_9ORYZ; Uncharacterized protein
STRINGLOC_Os02g57490.11e-139(Oryza sativa Japonica Group)
STRINGBGIOSGA005344-PA1e-139(Oryza sativa Indica Group)
STRINGORGLA02G0327800.11e-139(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105993443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.19e-45lateral organ boundaries-domain 16