PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G33790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 406aa    MW: 40361.4 Da    PI: 5.7751
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G33790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12219264555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  OMERI02G33790.1 219 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 264
                      99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-17212274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16216273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-13218268No hitNo description
PfamPF000102.6E-9219264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MQPNARQMHG GGGGGGQDDF FDQMLSTLPA VWSELGSGKP AWDLTAGVGG GASDDHSAAA  60
FDDSALLASR LRQHQIDGGG DKPIMLQLSD LHRHHGLAAG DDSGGAAGFL PLSLFADRSQ  120
DDIDAAFKSP NGAGGDHALY NGFGAAGMHG AAAMQPPPFG QGGSMPAQSF GGGAAASSGG  180
GGSASAAAAA AAGASSGGGA AAPPRQRQRA RRGQATDPHS IAERLRRERI AERMKALQEL  240
VPNANKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGASA VAPLVANMSS ESNGNGNATS  300
SSGNGDATNG SSNGDNNGGG TLRVTEQQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI  360
SSATSSSLLP RTGGGAGGSL HEGGNGTSPP LVNGAATGGD DAGGKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223228RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627343.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG92e-79BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0E0CSJ60.0A0A0E0CSJ6_9ORYZ; Uncharacterized protein
STRINGORGLA02G0311000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-41LJRHL1-like 3