PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G32260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 239aa    MW: 24847.5 Da    PI: 4.9831
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G32260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-183483255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  OMERI02G32260.1 34 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 83
                     69****998.**********9...336************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-303391IPR001471AP2/ERF domain
PROSITE profilePS5103221.5753491IPR001471AP2/ERF domain
SMARTSM003804.0E-343497IPR001471AP2/ERF domain
CDDcd000181.13E-173493No hitNo description
PfamPF008475.3E-113483IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-193492IPR016177DNA-binding domain
PRINTSPR003675.7E-93546IPR001471AP2/ERF domain
PRINTSPR003675.7E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVKSGQEAAP GSGGNAAAAA AAAARQGGGG RGRQYKGVRM RSWGSWVSEI RAPNQKTRIW  60
LGSYSTAEAA ARAYDAALLC LKGSAADLNF PVHLPFHIPA AAMSPKSIQR VAAAAAANAT  120
SPLQHHSGAA SFASATGGYN PTAAPTTPPC SYGDMSSCSA VSSPETANYY GADHDMVARE  180
DDVDYAALAD IDAFFQSPKC MDYSMMDPCS TFFSPAPESL AADWEDEGEI SLWSFSSLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-143194266ATERF1
3gcc_A1e-143194266ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041250.0AP004125.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1767_D02.
GenBankAP0052870.0AP005287.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_A11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878708.11e-135ethylene-responsive transcription factor ERF014
TrEMBLA0A0E0CRY71e-173A0A0E0CRY7_9ORYZ; Uncharacterized protein
STRINGOMERI02G31430.11e-174(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-27ERF family protein