PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G29850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 442aa    MW: 48565.4 Da    PI: 10.4312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G29850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.0003190207219
                      HHHHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsa 19 
                      r +h++ E+rRR +iN++
  OMERI02G29850.1 190 RSKHSATEQRRRTKINDR 207
                      889*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-4187207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MQLFQGEEPA HDFLSLRAGG GSSSPPFQHR EEQHSSHSSR GYGMEMRRSL RPLELAKQRS  60
RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRSSAF  120
AFAPALHGAR MENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGKTPYEA TRAEGRSSAS  180
SADQGPSTPR SKHSATEQRR RTKINDRQAS RGLKYFVNSC HTLIRRETKL LSFRRESKSM  240
RKPIQKGITR IPNPFHGYYH SHAKVYYRSC WRNTKNVSQV QGEDLSPSTQ DMNNEQYGPK  300
HISAAQPALF NTQSVTSTTT SSSHMATGTP QNLEKNSTPS NQPPWLSMST MRQESESGNK  360
MPNKHEKQTL HDENHSISSA YSQGLFNRLT EALKKSGLDP SQANIAVEIN LAKRARDNTS  420
DNSKINEDEE PIQITKRRCN KS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682280.0AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627557.10.0PREDICTED: transcription factor BIM2
RefseqXP_015627558.10.0PREDICTED: transcription factor BIM2
RefseqXP_015627559.10.0PREDICTED: transcription factor BIM2
RefseqXP_015627560.10.0PREDICTED: transcription factor BIM2
TrEMBLA0A0E0CQX80.0A0A0E0CQX8_9ORYZ; Uncharacterized protein
STRINGBGIOSGA005697-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.36e-15bHLH family protein