PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G25760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 308aa    MW: 32065.4 Da    PI: 5.4517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G25760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-19153203255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f++aeeAa a+++a+ +++g
  OMERI02G25760.1 153 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFDSAEEAAVAYDRAAYRMRG 203
                      8********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.34E-29152211No hitNo description
Gene3DG3DSA:3.30.730.101.0E-31152211IPR001471AP2/ERF domain
SMARTSM003802.0E-38153217IPR001471AP2/ERF domain
PROSITE profilePS5103224.197153211IPR001471AP2/ERF domain
PfamPF008472.1E-13153203IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-23153213IPR016177DNA-binding domain
PRINTSPR003671.4E-10154165IPR001471AP2/ERF domain
PRINTSPR003671.4E-10177193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MPLNPASREV AVLDSIRHHL LEEEEETPAT APATARRPVY CRSSSFGSLV ADQWSESLPF  60
RPNDAEDMVV YGALRDAFSS GWLPDGSFAA VKPESQDSYD GSSIGSFLAS SSSSEAGTPG  120
EVTSTEAAAV TPGIREGGDG EGEAVAVASR GKHYRGVRQR PWGKFAAEIR DPAKNGARVW  180
LGTFDSAEEA AVAYDRAAYR MRGSRALLNF PLRIGSEIAA AAAAAAGNKR PYPDTASSGS  240
SSPSSSSSSS SSSSSSGSPK RRKRGEAAAA SMAMALVPPP PPPAQAPVQL ALPPQPWFAD  300
GPIQQLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-38149216168ATERF1
3gcc_A4e-38149216168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1059400.0AK105940.1 Oryza sativa Japonica Group cDNA clone:001-205-B11, full insert sequence.
GenBankAP0046760.0AP004676.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1003_B06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY8313940.0AY831394.1 Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 3 (BIERF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623259.11e-149ethylene-responsive transcription factor 2
SwissprotO803372e-55EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A0E0CP920.0A0A0E0CP92_9ORYZ; Uncharacterized protein
STRINGOGLUM02G26840.11e-151(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-40ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]