PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G10250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 347aa    MW: 37123.3 Da    PI: 9.898
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G10250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.3e-17176209134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  OMERI02G10250.1 176 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 209
                      *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-13167210No hitNo description
SMARTSM004011.1E-16170221IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268174206IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-14174209IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.47E-15175207No hitNo description
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
PfamPF003202.6E-15176209IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSTIYMSQLP ATLPLMEGDQ DQGLYPAFHR AKDPPILFPF MIDSAVEHQG QSYGDQGLRR  60
QQVLGESNQQ FNDHMMMGGS DVFLAPFRPT IQSIGSDMIQ RSSYDPYDIE SNNKQHANGS  120
TSKWMSTPPV KMRIIRKGAA TDPEGGAVRK PRRRAQAHQD ESQQQQQQAL GVVRVCSDCN  180
TTKTPLWRSG PCGPKSLCNA CGIRQRKARR AMAAAANGGA AVSSAKSVTA APVNNKPAAK  240
KEKRAADVDR SLPFKKRCKM VDHVAAAVAA TKPTAAGEVV AAAPKKDQDH VIVVGGENAA  300
AIAPAQNPIS KAAAVAASPA FFHGLPRDEI TDAAMLLMTL SCGLVHS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0996070.0AK099607.1 Oryza sativa Japonica Group cDNA clone:J013048G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625859.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
SwissprotQ6YW480.0CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A0E0CI190.0A0A0E0CI19_9ORYZ; Uncharacterized protein
STRINGOMERI02G10170.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.18e-18GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]