PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G08510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 286aa    MW: 31869.1 Da    PI: 9.9668
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G08510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.7e-1620111798
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ++ +++++ l lp +fa+e + +++e ++ +l           r W+vk+     +g+++l++GW +F++a+gL++gD +vF++dg   f  +v
  OMERI02G08510.1  20 QPGSFRTK-LKLPDEFARELEAEERELRDAKLLVAGAgrrrrdRMWDVKV---VADGGVYLGRGWLRFARAHGLRDGDLLVFRYDGAAAF--TV 107
                      55555555.9**********88878777777776444578899*******...7778899************************998888..88 PP

                      EEE- CS
               B3  95 kvfr 98 
                      +vf+
  OMERI02G08510.1 108 TVFD 111
                      8887 PP

2B353.35.1e-171592321486
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      + l +p +f e+hg+  +e  +++    +grsW+v+l++    r +++r+vl+ GW +F+ +ngL +gD++ F+  +
  OMERI02G08510.1 159 QYLNVPVEFQEAHGYAARE--KVV-LRMRGRSWTVRLKHtkgrRPRRERTVLRYGWHRFCADNGLAVGDTCFFRALR 232
                      56889********998665..455.45599*******998887777788************************9554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-1812111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-1612111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.98713113IPR003340B3 DNA binding domain
SMARTSM010194.2E-1115113IPR003340B3 DNA binding domain
PfamPF023626.7E-1319111IPR003340B3 DNA binding domain
CDDcd100172.68E-1264111No hitNo description
Gene3DG3DSA:2.40.330.102.2E-27140256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-17142234IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-13144229No hitNo description
SMARTSM010197.0E-10144256IPR003340B3 DNA binding domain
PROSITE profilePS5086312.478146256IPR003340B3 DNA binding domain
PfamPF023623.3E-14160232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEEQMSNLRL ANFKFFTIIQ PGSFRTKLKL PDEFARELEA EERELRDAKL LVAGAGRRRR  60
DRMWDVKVVA DGGVYLGRGW LRFARAHGLR DGDLLVFRYD GAAAFTVTVF DDGTMCRRAY  120
HDAAGSGSSS DDNGEAAAAA TSQFVVTLRQ GNLGKKQAQY LNVPVEFQEA HGYAAREKVV  180
LRMRGRSWTV RLKHTKGRRP RRERTVLRYG WHRFCADNGL AVGDTCFFRA LRSGAGDVDD  240
DGDGDHVLSV TVHKADGGNS LEGSIIHRFA SISSFVACAL ITFKSM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203RPRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041911e-165AP004191.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1524_D08.
GenBankAP0048121e-165AP004812.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0026H03.
GenBankAP0149581e-165AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-165CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628624.17e-99B3 domain-containing protein Os03g0212300
SwissprotQ10Q261e-100Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0E0CHB40.0A0A0E0CHB4_9ORYZ; Uncharacterized protein
STRINGOGLUM02G07480.11e-144(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-13B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]