PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G02280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 211aa    MW: 22922.9 Da    PI: 10.2662
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G02280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.51.4e-3518103366
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................s 66 
                      +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLl qakpai  +tgt                      +
  OMERI02G02280.1  18 PKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLMQAKPAIVTATGTgvgadirralppfpklrplqvaP 103
                      6999***********************************************************77777777666666666666551 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.6E-292280IPR005333Transcription factor, TCP
PROSITE profilePS5136927.6132377IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MQVVAAAVGE RRMQGLGPKR SSNKDRHTKV DGRGRRIRMP ALCAARIFQL TRELGHKSDG  60
ETVQWLLMQA KPAIVTATGT GVGADIRRAL PPFPKLRPLQ VAPPPPHVGC RRGATRHVRG  120
IRRCHIGFAT MFAGHAAAAM PGLELGLSQD GHIGVLSARS LSQFYHQVGG AGAAGQLPHP  180
HHHHHHQHHQ QQEEDGEDDR DDGESDEESG Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041330.0AP004133.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_G03.
GenBankAP0047680.0AP004768.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0010C01.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621786.11e-72transcription factor TCP20
TrEMBLA0A0E0CEM51e-150A0A0E0CEM5_9ORYZ; Uncharacterized protein
STRINGOMERI02G02310.15e-99(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.16e-37TCP family protein