PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G02130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 184aa    MW: 20815.7 Da    PI: 6.2287
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G02130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.64.3e-38351341100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll++lp +er +a++++++eA +r++dPvyG++g+i++lq++++ ++ el
  OMERI02G02130.1  35 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQSLPMTERGNAANTMAMEAYWRVQDPVYGCTGIINRLQEEIRAVQCEL 128
                      6********************************************************************************************* PP

           DUF260  95 allkee 100
                      a+++++
  OMERI02G02130.1 129 ARTQAH 134
                      *99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.26434135IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3735132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MVYMVYKVER FGRIIMQDPE EDDDDQHQQH PAARRCAACR YLRRRCADDC VLAPFFPASR  60
PHRYACVHRV FGASNVARLL QSLPMTERGN AANTMAMEAY WRVQDPVYGC TGIINRLQEE  120
IRAVQCELAR TQAHLAIVVA SSQQPPPPPP PPPLLPPPPQ QQQEEQSPPP LLDPADEFLN  180
LDGH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149641e-137AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0047611e-137AP004761.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686C03.
GenBankAP0047081e-137AP004708.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0700D12.
GenBankAK1070781e-137AK107078.1 Oryza sativa Japonica Group cDNA clone:002-121-F06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649340.13e-74PREDICTED: LOB domain-containing protein 24
SwissprotP594674e-39LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594683e-39LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A0E0CEK81e-133A0A0E0CEK8_9ORYZ; Uncharacterized protein
STRINGBGIOSGA029005-PA2e-76(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.11e-31LOB domain-containing protein 23