PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G00890.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 546aa    MW: 57373.4 Da    PI: 4.3892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G00890.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.5e-12284327755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      e+Er+RR+++N  + +Lr+l+P+      +K++ a+iL  A++YI  Lq
  OMERI02G00890.4 284 EAERKRRKKLNGHLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 327
                      89*********************7.....7***************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.15E-13276338No hitNo description
PROSITE profilePS5088815.37277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-18278349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14284339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9284327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MAGGDHLLMK NSNAAAATAA VNGGGTSLDA ALRPLVGSDG WDYCIYWRLS PDQRFLEMTG  60
FCCSSELEAQ VSALLDLPSS IPLDSSSIGM HAQALLSNQP IWQSSSVEEE EEAADGGGGA  120
KTRLLVPVAG GLMAEEQQMA ELVMAQCGGG GGGAGDDGGG QAWPPPETPG FQWDGGADAQ  180
RLMYGGSSLN LFDAAAADDD PFLGGGGDAV GDAAAAAGAW PYAGMAVSEP SVVAVQEQMQ  240
HAAGGGVAES GSEGRELHGG DPEDDGDGEG RSGGAKRQQC KNLEAERKRR KKLNGHLYKL  300
RSLVPNITKM DRASILGDAI DYIVGLQKQV KELQDELEDN HVHHKPPDVL IDHPPPASLV  360
GLDNDDASPP NSHQQQPPLA VAGSSSRRSN KDPAMADDKV GGGGGGGHRM EPQLEVRQVQ  420
GNELFVQVLW EHKPGGFVRL MDAMNALGLE VINVNVTTYK TLVLNVFRVM VRDNEVAVQA  480
DRVRDSLLEV TRETYPGVWP SPQEEDDAKF DGGQAAAAAA AAAGGEHYHD EVGGGYHQHL  540
HYLAFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285292ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195800.0AK119580.1 Oryza sativa Japonica Group cDNA clone:002-117-B12, full insert sequence.
GenBankAK1067610.0AK106761.1 Oryza sativa Japonica Group cDNA clone:002-115-D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625730.10.0PREDICTED: transcription factor ABORTED MICROSPORES
SwissprotQ6YUS30.0TDR_ORYSJ; Transcription factor TDR
TrEMBLA0A0E0CE090.0A0A0E0CE09_9ORYZ; Uncharacterized protein
STRINGLOC_Os02g02820.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-50bHLH family protein