PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G36600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 193aa    MW: 19993.3 Da    PI: 8.3318
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G36600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.4e-161868155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr+++ +g+Wv+eIr+p +   r r +lg++ t+e Aa a++ a   l+g
  OMERI01G36600.1 18 CRYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVYFLRG 68
                     78*****777.**********943...5*********************999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-91868IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-241985IPR001471AP2/ERF domain
SMARTSM003801.9E-241990IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-161970IPR016177DNA-binding domain
PROSITE profilePS5103220.851984IPR001471AP2/ERF domain
PRINTSPR003671.0E-82031IPR001471AP2/ERF domain
CDDcd000181.06E-122785No hitNo description
PRINTSPR003671.0E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSRAECGGGV GGGEEERCRY RGVRRRRWGK WVSEIRVPGT RERLWLGSYA TPEAAAVAHD  60
TAVYFLRGGA GDGGGGGGAT LNFPERAAAT YGGGGAVARL SPRSVQRVAS DAGMAADAQL  120
VAARDAAPAP APTAAYARPD HCAGATAARH DELARRGMYA AHAHAAGANA RTSGERQLVC  180
AEEISVDDME ILM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-11784572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645971.14e-68ethylene-responsive transcription factor ERF015
SwissprotQ9C9I82e-31ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A0E0CB831e-132A0A0E0CB83_9ORYZ; Uncharacterized protein
STRINGOMERI01G36040.11e-133(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.14e-23ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]