PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G34960.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 969aa    MW: 107950 Da    PI: 6.5084
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G34960.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-10658687433
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                       k err+++NReAAr+sR+RKka++++Le+
  OMERI01G34960.3 658 AKTERRLAQNREAARKSRLRKKAYVQNLET 687
                      799*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.105.8E-24241IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF813837.85E-7250IPR001810F-box domain
PfamPF129374.4E-6239IPR001810F-box domain
SMARTSM002563.1E-6447IPR001810F-box domain
Gene3DG3DSA:3.80.10.105.8E-24102379IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520473.88E-18107380No hitNo description
SMARTSM003383.3E-7655731IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.278657701IPR004827Basic-leucine zipper domain
PfamPF001701.8E-7658689IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.2E-7659703No hitNo description
SuperFamilySSF579591.48E-6659702No hitNo description
CDDcd147085.09E-23659711No hitNo description
PROSITE patternPS000360662677IPR004827Basic-leucine zipper domain
PfamPF141443.6E-29740814IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    Send to blast
MEHLPVEVIG NILAHLSAAR DVMVASGVCR KWRTACRKHL HSLSFNSDDF PRDMTTRQLE  60
IVITQTIFQT MGLQCLSIHI DSTHEFSAAP VIAWLMYTRE TLRSLSYNVR TNPNVNILEK  120
CGRQKLEVLD LDHNTITGVE PSYQRFTCLK SLSLRHVSIS ALDLSLLVAA CPKIESLALD  180
FLEVVTSDPQ STMELTSHTL KSLFAKSVGV DKIILDTDNL EVLNLNALNL DLFELIGKGT  240
LKHLKIDDVS VTHMDIGEST DHLEAVDVSN FTIVRPKLYS MISRASNLRM LRFWGVVFDD  300
EDEIVDSETI AVSFPLLRHL SLSYELRDGL LHYSLQGSSP LENVSVLELG WTVISEHFGP  360
WVFGMIERCP NLKKLVIHGV LSEAKTREER QMLASFTSFI VCLMRKYVHV DICFSSNFTK  420
ACVELVVIMV QGDESSWRMA ASTHHERAIP LNQALAYGVQ AHASPSVAAA PPASFLDFQP  480
AAAAAAYFGE LEEALIHGAN AGGVVDPGMI RADVHSKSAA AAATAGYLAA RPPTLEIFPS  540
WPMRQQQQLH SGNSQSVGST TDSSSAQNTM PQMELVSPAS IRASSEHQHQ QQQQQPGQEV  600
MMVTTDDYSY KPGLAAASPS FQQQHQLQHH QQQQLHGGGD HDKRKHGSTR KDGKSVDAKT  660
ERRLAQNREA ARKSRLRKKA YVQNLETSRV RLQQIEQELQ RARSQGLFLG GCSAAGDMSS  720
GAAMFDMEYA RWLDDDSKRL TDLRGGLQAH LLDTNLGLIV EECMQHYDEL FQLKAALAHS  780
DVFHLLTGTW ATPAERCFLW MGGFRPSDLL KILIQQLDPL TEQQMLGIYN LQQSSEQAEE  840
ALAQGLQQLH QSLADTVAAG TLNDGPGVPN YMSLMAIALD KLASLESFYQ QADNLRQQTL  900
HQLRRILTTR QAARCFLSIG EYYRRLRALS NLWSSRPREN FIGTESVSPT GTELQPMHNQ  960
PQQNQYSGF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250|UniProtKB:Q7X993, ECO:0000269|PubMed:22353606}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013380.0AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616943.10.0transcription factor LG2 isoform X2
SwissprotQ5N7C70.0LG2_ORYSJ; Transcription factor LG2
TrEMBLA0A0E0CAL30.0A0A0E0CAL3_9ORYZ; Uncharacterized protein
STRINGOS01T0859500-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-115bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]