PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G34960.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 971aa    MW: 108294 Da    PI: 6.5304
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G34960.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-10660689433
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                       k err+++NReAAr+sR+RKka++++Le+
  OMERI01G34960.2 660 AKTERRLAQNREAARKSRLRKKAYVQNLET 689
                      799*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813837.85E-7250IPR001810F-box domain
Gene3DG3DSA:3.80.10.102.8E-24241IPR032675Leucine-rich repeat domain, L domain-like
PfamPF129374.4E-6239IPR001810F-box domain
SMARTSM002563.1E-6447IPR001810F-box domain
Gene3DG3DSA:3.80.10.102.8E-24102379IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520473.92E-18111379No hitNo description
SMARTSM003383.3E-7657733IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.278659703IPR004827Basic-leucine zipper domain
PfamPF001701.8E-7660691IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.2E-7661705No hitNo description
CDDcd147086.97E-23661713No hitNo description
SuperFamilySSF579591.48E-6661704No hitNo description
PROSITE patternPS000360664679IPR004827Basic-leucine zipper domain
PfamPF141443.6E-29742816IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 971 aa     Download sequence    Send to blast
MEHLPVEVIG NILAHLSAAR DVMVASGVCR KWRTACRKHL HSLSFNSDDF PRDMTTRQLE  60
IVITQTIFQT MGLQCLSIHI DSTHEFSAAP VIAWLMYTRE TLRSLSYNVR TNPNVNILEK  120
CGRQKLEVLD LDHNTITGVE PSYQRFTCLK SLSLRHVSIS ALDLSLLVAA CPKIESLALD  180
FLEVVTSDPQ STMELTSHTL KSLFAKSVGV DKIILDTDNL EVLNLNALNL DLFELIGKGT  240
LKHLKIDDVS VTHMDIGEST DHLEAVDVSN FTIVRPKLYS MISRASNLRM LRFWGVVFDD  300
EDEIVDSETI AVSFPLLRHL SLSYELRDGL LHYSLQGSSP LENVSVLELG WTVISEHFGP  360
WVFGMIERCP NLKKLVIHGV LSEAKTREER QMLASFTSFI VCLMRKYVHV DNIFHERIKS  420
NYGSVELVVI MVQGDESSWR MAASTHHERA IPLNQALAYG VQAHASPSVA AAPPASFLDF  480
QPAAAAAAYF GELEEALIHG ANAGGVVDPG MIRADVHSKS AAAAATAGYL AARPPTLEIF  540
PSWPMRQQQQ LHSGNSQSVG STTDSSSAQN TMPQMELVSP ASIRASSEHQ HQQQQQQPGQ  600
EVMMVTTDDY SYKPGLAAAS PSFQQQHQLQ HHQQQQLHGG GDHDKRKHGS TRKDGKSVDA  660
KTERRLAQNR EAARKSRLRK KAYVQNLETS RVRLQQIEQE LQRARSQGLF LGGCSAAGDM  720
SSGAAMFDME YARWLDDDSK RLTDLRGGLQ AHLLDTNLGL IVEECMQHYD ELFQLKAALA  780
HSDVFHLLTG TWATPAERCF LWMGGFRPSD LLKILIQQLD PLTEQQMLGI YNLQQSSEQA  840
EEALAQGLQQ LHQSLADTVA AGTLNDGPGV PNYMSLMAIA LDKLASLESF YQQADNLRQQ  900
TLHQLRRILT TRQAARCFLS IGEYYRRLRA LSNLWSSRPR ENFIGTESVS PTGTELQPMH  960
NQPQQNQYSG F
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250|UniProtKB:Q7X993, ECO:0000269|PubMed:22353606}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013380.0AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616943.10.0transcription factor LG2 isoform X2
SwissprotQ5N7C70.0LG2_ORYSJ; Transcription factor LG2
TrEMBLA0A0E0CAL20.0A0A0E0CAL2_9ORYZ; Uncharacterized protein
STRINGOS01T0859500-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-116bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]