PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G29510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 245aa    MW: 25769.1 Da    PI: 8.4014
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G29510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.23.1e-34381531100
           DUF260   1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                      +C aCk+lrr+C+++Cv+ap+f                 ++ +++fa+vh++FGasnv kll+++p   r+da+++++yeA+ar+ dPvyG+vg
  OMERI01G29510.1  38 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRRDAARTVCYEAQARIADPVYGSVG 131
                      7*********************************998555559*************************************************** PP

           DUF260  79 vilklqqqleqlkaelallkee 100
                      +il+lq+q++ l+ +l++l+++
  OMERI01G29510.1 132 TILALQHQVSLLQGQLSVLESQ 153
                      ****************999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.62837154IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-3838151IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MHAAQPPGSS KRRSAVERPA SGAGLQAEEA SSAGHGAPCG ACKFLRRRCV PGCVFAPHFS  60
GCGGSGVGAG VGGRGRERGA AEFAAVHRVF GASNVAKLLS RVPAALRRDA ARTVCYEAQA  120
RIADPVYGSV GTILALQHQV SLLQGQLSVL ESQLFNLRVA LASAHPDTPP QHFVVLQPAH  180
SAASTPNQVV VNYDDLPHAV DFMDAEPAAL RGLESLQLSQ PLQREEDKGH RDMNLFSDSV  240
GQRQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2424680.0AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630092.11e-151PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV33e-47LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0E0C8A91e-177A0A0E0C8A9_9ORYZ; Uncharacterized protein
STRINGORGLA07G0240800.11e-172(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-28LOB domain-containing protein 20