PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G28260.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 270aa    MW: 27353.5 Da    PI: 11.0937
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G28260.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20126177256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+++AeIrdp+  g  +r +lg+fgtaeeAa+a+++a+ +++g+
  OMERI01G28260.4 126 HYRGVRRRP-WGKYAAEIRDPTRHG--ARLWLGTFGTAEEAAAAYDRAAFRMRGA 177
                      7********.**********96544..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.6E-31125184IPR001471AP2/ERF domain
PfamPF008472.6E-14126176IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23126185IPR016177DNA-binding domain
PROSITE profilePS5103224.21126184IPR001471AP2/ERF domain
SMARTSM003808.3E-35126190IPR001471AP2/ERF domain
CDDcd000183.90E-17126186No hitNo description
PRINTSPR003671.9E-10127138IPR001471AP2/ERF domain
PRINTSPR003671.9E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSLSLGFSAG AGVGADRLAA APALQAAGAL PPRVDVDVSL SLARAANGQP SSYLPLNEND  60
SLDMVLFDVL REASAVAALS SSSSPELGAR TTVPVVAGHP AGRKGGGGGG GGRGAAARGG  120
AAGGRHYRGV RRRPWGKYAA EIRDPTRHGA RLWLGTFGTA EEAAAAYDRA AFRMRGAKAL  180
LNFPPAVAGD GIRRGGAEAA AAKQTNQTFR DEMSLGGIPD PPTPAKRTGT GESALRDAMR  240
REASESPETS PATTNTRSSP SRAAASTTLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-30122187166ATERF1
3gcc_A1e-30122187166ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103112KGGGGGGGGR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:11768541, ECO:0000269|PubMed:11971137}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:9878629}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032370.0AP003237.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0046E05.
GenBankAP0032490.0AP003249.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0435B05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615523.15e-71pathogenesis-related genes transcriptional activator PTI5
SwissprotO046812e-42PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A0E0C7U30.0A0A0E0C7U3_9ORYZ; Uncharacterized protein
STRINGOMERI01G27550.11e-138(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-12ethylene responsive element binding factor 2