PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G20790.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 1447aa    MW: 150136 Da    PI: 3.7015
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G20790.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD134.33.9e-1113721396125
          zf-LSD1    1 CggCrtlLsYPrGApsVRCalCdtV 25  
                       Cg+Cr+lL+Y+rGA +V+C++C+t+
  OMERI01G20790.2 1372 CGSCRILLAYFRGAGYVHCTCCQTM 1396
                       ***********************96 PP

2zf-LSD140.54.6e-1314101434125
          zf-LSD1    1 CggCrtlLsYPrGApsVRCalCdtV 25  
                       Cg+C tlL+YP+GAp+V+C+lC +V
  OMERI01G20790.2 1410 CGHCATLLMYPFGAPAVKCSLCLFV 1434
                       **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.4E-1013691399IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-713721395IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.5E-814081435IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-1014101434IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 1447 aa     Download sequence    Send to blast
MASSPETAKP LESARMGSPP PSHSPSPPPL QGDPSLPTDA PPPEPSPQPH HATPIPPPSP  60
GQATEGWPRA EEPQPPIDGT PGAAGPPAPP SFFPSLELGT SAAPPALEAA AAGAGQPGSP  120
SPRPPAEPAA EFYPGSAASS PSSSSYETAE DDSPASPPPT PPPLVLCASP DSSYTESSPA  180
RDRFGDEEGS HAAPEPPPPP TPLEGGPDAS SAEPAAMASP AREPMGSHTA PEPPTPPLES  240
GQEGFQQQQP HPQPTTHPEC DSSEPAEPLL PPTSPAEIAH TSPDSAEVDV VAVSPEEAPG  300
STAAMEVMYG ETDASAVSVS PVLGSVETDA AEIDVIAGMQ EEAPGSTVAM EVMYRENDTA  360
AVSVSPVLES REPDAAEVDV VAGVQEEAHG SKFSMEVTYR ETDAAAVSVS PVLGSGEPDK  420
AEIDVVEEMQ EEAHASRFAM EAMYEEPDAS AVSVSPVLES VEPDVTEIDV VSEMQEEEAP  480
DSTLAMEVTS GETDTAAVSA FPVLDGGDPD AAEKNVVAGM QEEEAPDSTL AIEVTSGETD  540
TAAVSVSPVL EGVDPDAAEI DVVAGMQEEA PGSTLAMEVT YRETDATAAS VSTVLDSRDP  600
DAAEVDVVVG MQEQAAGSAL AMLVTYGETD TSAVSVSPVL ESGEPDAAQI DVVAGMQEEA  660
PGSTLAMEVT YREVDAATVS VSLVLESVEP DAAKIDVVAR IQEEAPGSKL AMEVMYGETG  720
TAAVSVPLVL ESGEEGSLQE SMQRPSSPTM NIEQESMQRP FSPTIGIETS SPEMAPAGSE  780
NCKVSWLPLP PPTPLGESMP SLPVAAAPKV LLVMPEEAVE SVPSSEALDA EKPASITQAE  840
PSSPNTPPPG FENFKSSWLP LPTTPPPVET TDVLPDVVVT KAMEAPIEEV SRPLPALEVT  900
NMESDTVLSI LPTTVLPTEG TEGLLQQPLL RPPSPVVQSE PCLQNEMAPP GFENFKSSCS  960
AEEIAPPGSD NFKSSSEPCS PEEMAPPGFE NFKSSSEPCS QEEMAPPGFE NFKSSWPPLP  1020
TLPQTVPDAA AADALAATVE EAAGPPPALE LEAMDVDMDA IHPPPLPFDS GVESSQKPLP  1080
RAPSPIMQEA PCSPDRAPPG FETYKSSQLL LPSPSLAQTT NVRQDQSVTE PVSVIEEAPQ  1140
PLHSVEVMGA HMDAVPPLLP SFESGEDGLS PQQFAQPPPA EKDTTTCLPD MVHSGCDNSE  1200
PSQLLSLPAV ISPVQTPDGL ADVPAIDRVA MALEESPQRP LVSGEMEAGT VPIQSSPLKN  1260
VSEGSLPQLE SESHSPTSQA ADSLLDASDS KSVAVASEEM SQLPLASQAT TTDLDSTTAM  1320
QPQSEGIVDE SLQPQHPPSS TAHDSPCLQN SVPLVPPPPS PYLNKEVGQM VCGSCRILLA  1380
YFRGAGYVHC TCCQTMNYVL EAHEVGKVHC GHCATLLMYP FGAPAVKCSL CLFVTEIGER  1440
NVRRRLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0033140.0AP003314.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0046B10.
GenBankAP0028660.0AP002866.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0410E01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621461.10.0PREDICTED: fibrous sheath CABYR-binding protein
TrEMBLA0A0E0C4L40.0A0A0E0C4L4_9ORYZ; Uncharacterized protein
STRINGLOC_Os01g42710.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-29lsd one like 2