PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G18670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 125aa    MW: 13234 Da    PI: 7.0265
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G18670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.26.1e-3491111100
           DUF260   1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                      +CaaC++++r +C+++C+lapyfpa++ ++f++++ lFG++ +l+ l+a+  ++  r++am+s+++ A+ara dPv+Ga+gvi++lqq+l+ +k
  OMERI01G18670.1   9 PCAACAHQGRpSCPAGCPLAPYFPADRLERFEYANLLFGVDGILRRLEAAgpDPGARRAAMASVAFVADARAADPVHGAYGVIRNLQQELAGVK 102
                      7*********9***************************************655666************************************** PP

           DUF260  92 aelallkee 100
                      ae+a+++++
  OMERI01G18670.1 103 AEIAAIRQK 111
                      ****99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.5598112IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-289109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MADPPHHPPC AACAHQGRPS CPAGCPLAPY FPADRLERFE YANLLFGVDG ILRRLEAAGP  60
DPGARRAAMA SVAFVADARA ADPVHGAYGV IRNLQQELAG VKAEIAAIRQ KQQQAQPPPP  120
PEDGH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-173CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640499.18e-59PREDICTED: LOB domain-containing protein 22
TrEMBLA0A0E0C3S12e-84A0A0E0C3S1_9ORYZ; Uncharacterized protein
STRINGORGLA01G0166400.18e-65(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153751118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-09LOB domain-containing protein 27