PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G06530.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 225aa    MW: 24336.3 Da    PI: 6.3058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G06530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.3e-174593355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  OMERI01G06530.1 45 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 93
                     9****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-3444107IPR001471AP2/ERF domain
PROSITE profilePS5103222.844101IPR001471AP2/ERF domain
PRINTSPR003672.8E-94556IPR001471AP2/ERF domain
PfamPF008479.5E-124593IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2045102IPR016177DNA-binding domain
CDDcd000188.27E-3045103No hitNo description
Gene3DG3DSA:3.30.730.109.9E-3145102IPR001471AP2/ERF domain
PRINTSPR003672.8E-96783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAASEQSSES SSTASTSSCG KKQQVAGKRK REDVGGGEQA VAVAYRGVRM RAWGKWVSEI  60
REPRKKSRIW LGTFPCPEMA ARAHDVAALS IKGARAVLNF PDLAPALPRP ASLAPRDVQA  120
AAALAAVMHH HKHPSSSTST SSPPAAPPPD EHHPRDEPQQ PQPSREDDQQ QQPAAAAQMA  180
VAELVFDELA PLWVEDVVEF GPSDHCWTAY DALDPIGLQP LLWEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-16451011572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1088730.0AK108873.1 Oryza sativa Japonica Group cDNA clone:002-152-C11, full insert sequence.
GenBankAP0031970.0AP003197.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1015E06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3393740.0AY339374.1 Oryza sativa (japonica cultivar-group) Ap21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644400.11e-112ethylene-responsive transcription factor TINY
SwissprotQ9LYD37e-44DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0E0BYQ11e-161A0A0E0BYQ1_9ORYZ; Uncharacterized protein
STRINGOMERI01G06630.11e-162(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-31ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]