PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G06500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 847aa    MW: 91726.1 Da    PI: 6.6131
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G06500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.1e-191270357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OMERI01G06500.1 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70
                     6789*****************************************************97 PP

2START1371.9e-431713602202
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlmv 95 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W +++++++++             
  OMERI01G06500.1 171 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVV------------- 250
                      789*******************************************************.8888888888*******88776............. PP

                      EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
            START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                       +l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+d++ +++++++r+l+
  OMERI01G06500.1 251 -NLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDVEPWSVPEVVRPLY 343
                      .799***************************************999999********************************************* PP

                      HHHHHHHHHHHHHHTXX CS
            START 186 ksglaegaktwvatlqr 202
                      +s+++ ++k+ +a ++ 
  OMERI01G06500.1 344 ESSAMVAQKISMALCKI 360
                      ************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.532771IPR001356Homeobox domain
SMARTSM003896.9E-15975IPR001356Homeobox domain
CDDcd000863.80E-161272No hitNo description
PfamPF000462.2E-161270IPR001356Homeobox domain
SuperFamilySSF466898.55E-171373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-181470IPR009057Homeodomain-like
CDDcd146864.14E-664103No hitNo description
PROSITE profilePS5084817.988161346IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-15168339IPR023393START-like domain
SMARTSM002341.5E-32170364IPR002913START domain
SuperFamilySSF559612.33E-31170348No hitNo description
PfamPF018526.7E-41171359IPR002913START domain
PfamPF086704.0E-50702846IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW  60
FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVFDNG CYRHHHGGGG  120
GAPQVAAGMR RAHHATDTSC ESVVTSGHHQ HNVVQPPPPP RDASPAGLMS IAEETLTEFL  180
SKATGTAVEW VQMPGMKPGP DSIGIIAISH GCAGVAARAC GLVGMEPAKV AEILKDRPLW  240
LRDCRSMDVV NLYAPTTLAP ARDFWLLRYT SILDDGSLVV CERSLSSKQG GPSMPLVQPF  300
IRGEMLPSGF LIRPSDGGGS VIHIVDHMDV EPWSVPEVVR PLYESSAMVA QKISMALCKI  360
QALRYLRQVA HEDTHSVITG WGRQPAALRA LSQKLTRGFN EALNGLADDG WSVIESDGID  420
DVCISVNSSK VIGCNATFSS GLPIVNTGVL CAKASMLLQD VSSPSLLQFL REHRSQWADS  480
NLDAFFASAM KPNFCNLPMS RLGGFSGQVI LPLAHTFEPE EFLEVIKLGN ASNYQDTLVH  540
RDLFLLQMYN GVEESSAGTC SELIFAPIDA SFSDDSPLLP SGFRIIPIDS PLDTSSPNCT  600
LDLASTLEAA TPRSRISGVN GGGGGGCAAA ATSSKAVMTI AFQFAFDGHL QDSVAAMARQ  660
YMRSIISSVQ RIAVALSSSR LVPPGACAAA AQLAPATPEA VTLPRWICQS YRFHFGAELI  720
KSVDANSSSE SILKAVWHHP SAILCCSLKA MPVFTFANQS GLDMLETTLV ALQDMTLEKV  780
FDDQGRKNLC TELPNIMEQG MACMEGAVCV SSVGRAASYE KAVAWKVVDG DGGAHCICFM  840
FINWTFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624690.10.0PREDICTED: homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0E0BYP60.0A0A0E0BYP6_9ORYZ; Uncharacterized protein
STRINGBGIOSGA002186-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein