PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G04770.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 182aa    MW: 19205 Da    PI: 10.7877
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G04770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.91.9e-1288148262
                      XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      ke  r +r+ +NR++A+  R+RKka++ eLe k+k Le  N +L +++++l++e  +l++ 
  OMERI01G04770.1  88 KEQNRLKRLLRNRVSAQQARERKKAYMTELEAKAKDLELRNAELEQRVSTLQNENNTLRQI 148
                      78899***************************************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-1387151IPR004827Basic-leucine zipper domain
PfamPF001706.0E-1188149IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.18589152IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-1692151No hitNo description
SuperFamilySSF579595.0E-1292149No hitNo description
CDDcd147049.60E-1592142No hitNo description
PROSITE patternPS00036094109IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MAAQEQEQEK QQAKTSTTSS LPSSSERSSS SAPNNLKEGG GVESDEEIRR GKEDGKQQGG  60
GGGGAAAAGG GQEQAPPARK RGRSAGDKEQ NRLKRLLRNR VSAQQARERK KAYMTELEAK  120
AKDLELRNAE LEQRVSTLQN ENNTLRQILK NTTAHAGKRG GGGGGKGGDG GGGGKKHHFT  180
KS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163171GGKGGDGGG
2165174KGGDGGGGGK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032151e-163AP003215.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0089K24.
GenBankAP0149571e-163AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655674.11e-64transcription factor HY5
RefseqXP_015617496.11e-64transcription factor HY5
SwissprotQ9SM502e-41HY5_SOLLC; Transcription factor HY5
TrEMBLA0A0E0BXU51e-123A0A0E0BXU5_9ORYZ; Uncharacterized protein
STRINGPavir.Eb00436.1.p6e-68(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-32bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]