PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN546796.1_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 59aa    MW: 6526.34 Da    PI: 11.5291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN546796.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-112957230
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                HLH  2 rrahnerErrRRdriNsafeeLrellPka 30
                       rr+h+e+Er+RR+riN  +++Lr l+P+a
  KN546796.1_FGP001 29 RRSHSEAERKRRERINAHLDTLRGLVPSA 57
                       99*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-92458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.3412759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-92857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-92957IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-63159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
MVAARSGDDA ELGLDVECLA AAARRTRARR SHSEAERKRR ERINAHLDTL RGLVPSASR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN546796.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-84CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661325.14e-13PREDICTED: transcription factor bHLH30-like
TrEMBLA0A0E0E5082e-30A0A0E0E508_9ORYZ; Uncharacterized protein
STRINGONIVA09G13640.17e-30(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569