PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542610.1_FGP002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 643aa    MW: 70696 Da    PI: 6.4397
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542610.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.31.9e-16110195291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle....leHnHel 89 
                        fYn+YA+++GF+vrks+s+          r+ +Cs+egk++ +  + +k++r+r + r+gC+a ++v++  ++  +v+ +      +HnH+l
  KN542610.1_FGP002 110 FYNKYAEHAGFDVRKSRSRAA-------YREICCSREGKNKYRGYE-TKRERRRGSARIGCRAYVRVRNVVREGEVVSVVFddvlVQHNHPL 193
                        9***************98877.......7899************99.9999999**************998555555433334449*****9 PP

               FAR1  90 ap 91 
                        +p
  KN542610.1_FGP002 194 TP 195
                        85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-11110195IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MASGGEDPGP SDVRSHVPAL VADRSHLMQG NDVQRHDDVQ RGGLQQLSGG DGGGDTGSES  60
TRTDRPPCVD DAHMRTPTRN VMHIHGAHVP DEMVPKFGME FKSYEMAYAF YNKYAEHAGF  120
DVRKSRSRAA YREICCSREG KNKYRGYETK RERRRGSARI GCRAYVRVRN VVREGEVVSV  180
VFDDVLVQHN HPLTPSPSAV KHMRSHKQHG DTLMEFVDTM QQCRVPQSSI MGVLSDMHGD  240
RESIPFTTRD LENRTKVFSL DAQQLVKWGR RSSVAFERAT SVMKGLRNQL EEIPADVHGL  300
DADDGVSEHE VEVGDGARPS IHRGASAVDE ISRRPPPKST TKGRGSDPIE TVRLGAPGPK  360
KCTRGCSWCG LKDGHNVSTC PKNPANFERL AAASSRGKRK RGRPRGGGSG GSRGRKGVRR  420
TLMDEWEGGQ EDEGCSVQGD EGDGISVPND GDWEERCWLS TGDSTGRRVD GWNVWVGVDN  480
NVTVHDGLDS CLSISRGESI GAYMSGGADF GKELAKLPDG SPASPSIHGD SSGSHSPDRL  540
TPSPVMREVD LPPEFRVRGP PTPDWPPPPT ETDEERFRED LEQYYNDGYV STPCPSPPSD  600
LCDSEENLED EDEQDDNRRH GDVLPKVNQS KDTASPPSKR KKV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0035200.0AP003520.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9GCP91e-149B9GCP9_ORYSJ; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1625822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-11FAR1-related sequence 5