PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542505.1_FGP002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 510aa    MW: 56885.2 Da    PI: 9.5581
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542505.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.91e-1592178191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkle...leHnHe 88 
                        +fY++Y++++GF+++ks++k +        r+ +C++egk++ + ++ +k++r r + r+gCka +kvk+   +g+++  +++    eHnH+
  KN542505.1_FGP002  92 DFYERYSYNAGFDIKKSRNKPT-------FREICCTREGKNKYRGDE-SKRERMRGSARIGCKAYVKVKNVIrEGEFVSVRFDdviIEHNHP 175
                        6**************9987665.......899************999.999999***************988666665445443339***** PP

               FAR1  89 lap 91 
                        l+p
  KN542505.1_FGP002 176 LTP 178
                        986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.8E-1192178IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MESPVHTSTT SPLSRLGVGG DHWGDHHVNA GQPGSPSTPS GSKEGVDRPP CVQACEMNMP  60
EKDRVYSHGS KLREEMVPKV GMVFDSYEEA YDFYERYSYN AGFDIKKSRN KPTFREICCT  120
REGKNKYRGD ESKRERMRGS ARIGCKAYVK VKNVIREGEF VSVRFDDVII EHNHPLTPSP  180
SAVKLMRSHK HRDETLMEFV DTMQQSRVPN SSIGVPIVKT PWSFTEQLSR VYTRAVFKVF  240
EDSLHDRMFC PHLLRAFVHA QVEKIPHMYV LRRYTKQAKS DVNYDRRDRP MAGPDGVKES  300
YRTKLLSYDA MQIVKLGRRS KVAFDRATAV LKGLRKQLEE IPPDSDVGAG NAVTSGKGAE  360
GVADTMRAGQ SMSMSEHDCE RVSRRPPPRS MTKGRASEPT EKVKLGARGD KKCTRGCGWC  420
GLKVGHNSST CPNNPANFKR IAEANNKGKC KRGRPRGSGV GGGRGRKAVR RNLIDEWAEG  480
PVGGECSMRS EEGDDDCSVQ SGGDTEDLSE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0054520.0AP005452.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0453E03.
GenBankAP0038250.0AP003825.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1343_D04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0P0XA110.0A0A0P0XA11_ORYSJ; Os07g0664100 protein
STRINGBGIOSGA026335-PA1e-177(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.25e-10FAR1 family protein