PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542275.1_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 908aa    MW: 104486 Da    PI: 7.1687
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542275.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.71.6e-17155237191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        +fY+++A ++GF  ++ +++++      +k t  C k g+++ + +  +++r+++  +rt+C+ak++vk++ +g+we + +++eHnH+l+p
  KN542275.1_FGP001 155 RFYETHALKTGFVAKRGTNYRR------KKFTIECHKTGTSKLTPNP-QRKRKKNIIERTQCQAKVVVKLN-KGQWEYAAVRNEHNHPLCP 237
                        5*******************99......46789**********9999.9**********************.9****************97 PP

2FAR157.25.6e-18422507191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fY ++A  +GF  ++ +++k+      +k ++ C+k+gk + +k++    k+rr++ +++t+Cka++ vk++ +g+we t +++eHnH+l+
  KN542275.1_FGP001 422 RFYYAHALLTGFVGKRGTNYKR------KKFHLECNKSGKMKLTKSSenPMKKRRSNLVEKTQCKARVIVKLD-KGEWEFTAVRHEHNHPLC 506
                        59******************99......4678********998887755789999******************.9****************9 PP

               FAR1  91 p 91 
                        p
  KN542275.1_FGP001 507 P 507
                        7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-15155237IPR004330FAR1 DNA binding domain
PfamPF031012.6E-16422507IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.803752788IPR007527Zinc finger, SWIM-type
SMARTSM005750.0078763790IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MEDVLMHILP VDSEQASNND GQTVITPVEL IKKPVEKQVI TEGRLQLAGD GYQLLSSNGI  60
DKTAEQLYVD QLGRQTNSMD QSLQHTDGQN QSHDNMESNE VSSDDRNSDG DSDRSLGNES  120
DKGLGAHYSP SLMELDNARP PELGMKFATL EDAQRFYETH ALKTGFVAKR GTNYRRKKFT  180
IECHKTGTSK LTPNPQRKRK KNIIERTQCQ AKVVVKLNKG QWEYAAVRNE HNHPLCPSYS  240
LRFSKRKRRR NPPSQKQLDV QRNSDQLTQA DNLEERLSQP LISADSNEVN NKRMPRHAEN  300
SIPTVEKEPV DKLQPAGDYQ EQSSNGIDKN AERPIVDKLG EQTNSIDHSL QHTEEHNRSH  360
DNVESSEAPS EDTSSESNSD SSSGDESDKE LGKYFYPSFD ELKNSRPPEP GMKFPSLQAA  420
QRFYYAHALL TGFVGKRGTN YKRKKFHLEC NKSGKMKLTK SSENPMKKRR SNLVEKTQCK  480
ARVIVKLDKG EWEFTAVRHE HNHPLCPSPL LARFIVDHKQ MSTGEKSFLR VLQQNRDTSM  540
EKAFAELMPH VRLRFCKRHV MSKAQEKLGD FMTARGNINA DLHNLVGNSL VETEFEEGWV  600
ELIERYNASE NQHLQLMWQT RKSWAPVYFR EDLYPFIDSV SSNEGINSLF KGNMLPKDTI  660
DKFIGQFKEI QENIAKVHEE DRFQSGADLK YISMQPIEQH AAHIYTREIF LKVQKELLHS  720
TAFNVQEIQI GTVYRLEKVF NYENPEFDRN YFEVLAEPGI NAFKCQCAKF TRDGIPCCHI  780
FRLFTQFGIN EIPEQYIMPR WTKKFREEQL KQNKEKLFDK HGIKDSENTL RYAMLMSKAA  840
EICRKICHDE AKCSIFMQEL DKIQEKLITE SRENAQNDNP CREQGALQQE HRGSSSNAEQ  900
EQQHTGGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196200RKRKK
2244249KRKRRR
3245249RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0640780.0AK064078.1 Oryza sativa Japonica Group cDNA clone:002-100-A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627510.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLB8AFM70.0B8AFM7_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA007977-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-30FAR1-related sequence 5