PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542241.1_FGP002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 1088aa    MW: 125543 Da    PI: 6.7515
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542241.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.11e-16576651167
               FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklk 67 
                        +f+n+YA  +GFsv+++++++s   krnge+++ tf+C+++gk+++e+++       + er++++ + t+C++ l 
  KN542241.1_FGP002 576 DFFNFYALLAGFSVVIAHNYHStskKRNGEVIRVTFKCNRHGKAKSESQEeeteetVVAERNSNEIKATSCNCALS 651
                        6********************99999*******************99999899888888999***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-15576651IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.423831867IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-4832867IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-6842869IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1088 aa     Download sequence    Send to blast
MELEEEKDPP KHQSKSKMNS AEIKKRKIDL GKDQGSEKKE MSGKNIKCIK ETGTKGQSKE  60
LQKEESKSRK STKDKSKKNK DMTQVPANAE EFHKEYTTKV IRKESITDSS STEQVINTYS  120
IQEMETNEQV KSKDTSKAIA EKIHKEYSTK VNKQESRTVS NSKSKEQVIR TSNIEEKQKR  180
KQIISENNSK DMTQVQANAE EFHKEYTTKV NRQETITDSS SIEQVIGTSS IQEMETNEKV  240
KSKDTSKGNK DNGQSGRSIS LDTKKDVNLK YKDDRLILGK AKIFSKYHSE ITYYNFNFYE  300
AGRSISLDTG NKDNKDAERS IQPGNIQNMT QLVLTEHNAN TLISDMTQVP ANAERIHKEI  360
TTKVNKQESR KGNKDNKDAE RSIQPGNIQN MTQLVLTEHN ANTLISGAQN FSYTSLMEQI  420
ISSQPSISEV QQEISTESNF VATPRAFQNS MILTTSRTED IPFDMDYADT NQVEDEDLED  480
NELENWNLDM FNLSNGQNVQ NSADNSTEIG NQATTNVDAA ESNDSDANGE MLTEEDINNF  540
LEQEQEEATK GNNAAIDAKY IPRVDMQFKS IKEAHDFFNF YALLAGFSVV IAHNYHSTSK  600
KRNGEVIRVT FKCNRHGKAK SESQEEETEE TVVAERNSNE IKATSCNCAL SKEGLYDEYE  660
DIMNNSVTEE EFEYLWKEMV DSYEVQHINF LKHMWSIRKR FIPVYFKTNF CPFIKSTALS  720
EGTNSRFKKD VGPQYSITSF LIEYVRVMDT IQNLEQLDDH NSRTKRPSKL WSHYYIEYQA  780
VKLYNSKIFK KFQVELKRTT RLQLIEVEKL KTYEVFLALN QKIKVVRRRK YLVIVDSEKE  840
EYTCICSKFE KDGLLCSHIL KIMLHLNIMK IPEKYIIDRW RKKDYKEKSD FEDRIIPLSE  900
SSVLRFNILS RKCAEIASQG SKSIDSFQFA VDQIDKLEKE LISMNSEQRT KQQMEIDKTD  960
TTNGEVIEET EENNEEILID PDIAKSKGRP SQRYKSFREE LQSKEVYHCS HCQRTDHTFP  1020
TCPLKHIEFD LPRKKIRKTK NTAQKLQNAE EEQTDGSKKT NKGKKQEATT QVLVEQKGTK  1080
KRKTDGSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1823829KVVRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAL7316230.0AL731623.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083D01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649296.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ0DQG40.0Q0DQG4_ORYSJ; Os03g0598600 protein
STRINGLOC_Os03g40160.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1533535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.22e-25FAR1-related sequence 3