PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541071.1_FGP002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 606aa    MW: 69998.7 Da    PI: 5.0961
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541071.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.62e-23308407191
               FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                        +++n+YA+++GFs+++ +s ++   krnge+++ tf+C+k+ k+e+++kk         +er+t+++  t+C++ l++ ++ +++w++t+++
  KN541071.1_FGP002 308 EYFNFYAYMAGFSIVNVHSARTvskKRNGEVIRVTFKCNKYVKAEPSSKKkkekeeiVISERKTNEVIGTECECVLVICER-NSEWVITRID 398
                        59****************99998999******************9999997777777777888****************99.9********* PP

               FAR1  83 leHnHelap 91 
                        l+HnHel+p
  KN541071.1_FGP002 399 LDHNHELSP 407
                        *******86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-23308407IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MRKKLTRNSL GELTKQESCK GNISDYCKCL TKAVKIDQIQ VNADMTQVTG ITGEKCKGCT  60
LTVNTQESRT VSKKKDMSEL TEMSEEKTKE GTRQDSNTDS KKQGVQIPGT IKMVQDKKLQ  120
TGENSVEKDQ KSEEQHCTNI DDSKLDKLAV KYNKVELRNE KTARTDKFTS YTSLMQQIIS  180
SQQTTSNDFE VEPICVETLE KENFEKNAED DQIEFELNDH QSTEAWSLDM FNLKDCVEFQ  240
DQHLVESNQN NESKNDAGQN EEDLTEYDIE QFLNEERQEA TKGNNANIDR KYIPELHQKF  300
KSVEEAQEYF NFYAYMAGFS IVNVHSARTV SKKRNGEVIR VTFKCNKYVK AEPSSKKKKE  360
KEEIVISERK TNEVIGTECE CVLVICERNS EWVITRIDLD HNHELSPPDE VRFLRGSKTI  420
ETYQYLLEES NKISSTLKSM IEECENQNVN AEDNNLQNGN AEINEDPENT DVEEQTFENA  480
EVNENPENID EVNDKEYLQD PDIANSKGRP RERYISIREQ IKEKETNHCS HCGRIEHTFP  540
TYPFKHIEFD LPRKKKRKVQ NKAKEDGQEQ KKNAAPGKRK SLKDKTMGST RCNVEVQNSS  600
KKMKKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1553558KKKRKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149681e-37AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL7317851e-37AL731785.2 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649296.15e-49PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ75L927e-78Q75L92_ORYSJ; Uncharacterized protein
STRINGLOC_Os02g01950.11e-93(Oryza sativa Japonica Group)