PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540694.1_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 154aa    MW: 17134.6 Da    PI: 9.4252
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540694.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS126.92.3e-39111430139
               GRAS  30 laspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDf 117
                        +asp+g +pm+R+aayfteALa r++r++++++++ pp+e +++     ++ ++al++++ ++Pi++f h+t N+ +l+++eg++rvH+iDf
  KN540694.1_FGP001   1 MASPAGpTPMHRVAAYFTEALALRVVRMWPHMFDIGPPRELTDDAfggGDDDAMALRILNAITPIPRFLHFTLNERLLREFEGHKRVHVIDF 92 
                        589***9***********************************9989999******************************************* PP

               GRAS 118 disqGlQWpaLlqaLasRpegp 139
                        di+qGlQWp Llq+La+R++  
  KN540694.1_FGP001  93 DIKQGLQWPGLLQSLAARASHR 114
                        ******************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035147.9E-371114IPR005202Transcription factor GRAS
PROSITE profilePS5098523.0151154IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MASPAGPTPM HRVAAYFTEA LALRVVRMWP HMFDIGPPRE LTDDAFGGGD DDAMALRILN  60
AITPIPRFLH FTLNERLLRE FEGHKRVHVI DFDIKQGLQW PGLLQSLAAR ASHRSFLVAA  120
HRGEASERDC RKARAASDGI GKGNGDFCVS RFAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-13911039134GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0028380.0AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22.
GenBankAP0011680.0AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02.
GenBankAK1064490.0AK106449.1 Oryza sativa Japonica Group cDNA clone:002-103-E10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642886.13e-61PREDICTED: scarecrow-like protein 28
RefseqXP_015642887.13e-61PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN37e-43SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A0E0L7871e-67A0A0E0L787_ORYPU; Uncharacterized protein
STRINGBGIOSGA022020-PA1e-60(Oryza sativa Indica Group)
STRINGLOC_Os06g03710.11e-60(Oryza sativa Japonica Group)
STRINGORGLA06G0016600.11e-60(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.17e-42GRAS family protein