PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540502.1_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 162aa    MW: 18434.1 Da    PI: 9.3478
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540502.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1522.4e-1617103191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHe 88 
                        +fY++YA+++GF+++ks+++ks        r+ +C++egk+ ++  +  +++r+++++++gCka +k++ ++     +  + + +el+HnH+
  KN540502.1_FGP001  17 NFYKTYAYHAGFDIKKSRTHKS-------IREVCCTREGKHVSKVAD-CDRERKKPSKKMGCKAYVKLRHNYdggvLSSVQYDVVELQHNHP 100
                        6*****************9999.......6889**********9999.899999*****************953222234455677****** PP

               FAR1  89 lap 91 
                        lap
  KN540502.1_FGP001 101 LAP 103
                        986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1117103IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MVPTKGMAFP TYDDPYNFYK TYAYHAGFDI KKSRTHKSIR EVCCTREGKH VSKVADCDRE  60
RKKPSKKMGC KAYVKLRHNY DGGVLSSVQY DVVELQHNHP LAPSPSAVKH MRAHKNHDDT  120
AMKIVDTMQE SHVPQSCIMG VLSDLHGGLD KIPFTTRDVE NR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0057730.0AP005773.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0085C03.
GenBankAP0054680.0AP005468.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0020P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0P0WXC71e-113A0A0P0WXC7_ORYSJ; Os06g0517100 protein
STRINGBGIOSGA040624-PA1e-111(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-14FAR1-related sequence 5