PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540386.1_FGP003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 489aa    MW: 54233.1 Da    PI: 5.8341
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540386.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.63.1e-331292681128
                NAM   1 lppGfrFhPtdeelvveyLkkk..vegkk...leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                        lp+G++F+Ptd+el+++ L+k+  v +k    +++  +i++v+    i++++P++Lp  vk++ +  +fF+++ k+y+tg rk+r+++    
  KN540386.1_FGP003 129 LPRGVKFDPTDQELLWHLLAKHgkVGAKAhpfIDE--FIPTVEeddgICYTHPQKLP-GVKQDGSVSHFFHRTFKAYNTGIRKRRKINtgdl 217
                        699************99998862255555444233..2444422245**********.677888899******************8663344 PP

                NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         + +W++tgk+k+v++ +g++ g+kk++v+y  + +  k+ekt+Wvmh+y+l
  KN540386.1_FGP003 218 aDVRWHKTGKTKPVVV-DGKHLGCKKIMVLYmsTMKGGKPEKTNWVMHQYHL 268
                        4667************.999***********6534666777*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-38114287IPR003441NAC domain
PROSITE profilePS5100529.661129287IPR003441NAC domain
PfamPF023651.7E-14130268IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MDAVQPSNAS INRVHLVYVL VRRLALVGSL VGRGGLRLPA GGAGAAMTGC IVLFMRPGVR  60
TASYIRGTVC SCLRTSWIID SHRIASKIKN ASGSVDASKH KWVSNPTKAC PRCNHIIDNS  120
DVVHQWPGLP RGVKFDPTDQ ELLWHLLAKH GKVGAKAHPF IDEFIPTVEE DDGICYTHPQ  180
KLPGVKQDGS VSHFFHRTFK AYNTGIRKRR KINTGDLADV RWHKTGKTKP VVVDGKHLGC  240
KKIMVLYMST MKGGKPEKTN WVMHQYHLGT GEDEVEGQYV VSKLLFQQQF KPGEKNAQDL  300
TSADALESIV AEDLPNIPPL PLEEHVFTNQ ELEVLEKSET ITDQGKETSE INNEDNAVED  360
VAHMATEKPE DGDNPSSQDP KWWEGESQFL LDSQQLAENL AICDEFLQSQ SQTSCGGGDD  420
ETDKIKPRLA VYAQLPVEDL KKDLEECQRL DPSDGTNLEL ENASEFRLSQ IEFSQDSFTT  480
AWAGGKVID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0604340.0AK060434.1 Oryza sativa Japonica Group cDNA clone:001-011-B08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640881.10.0PREDICTED: NAC domain-containing protein 8
SwissprotQ6NQK21e-139NAC8_ARATH; NAC domain-containing protein 8
TrEMBLB9FSN10.0B9FSN1_ORYSJ; Uncharacterized protein
STRINGBGIOSGA022664-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-140NAC family protein