PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539964.1_FGP007
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 50aa    MW: 5358 Da    PI: 7.809
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539964.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY752.5e-23540135170
              YABBY 135 eeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        eeiqrik+snP+ishreafsaaaknWah+P++hfgl
  KN539964.1_FGP007   5 EEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 40 
                        9*********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.5E-20540IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 50 aa     Download sequence    Send to blast
MGLVEEIQRI KTSNPEISHR EAFSAAAKNW AHLPRLHFGL SVADGGGGSN
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539964.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740133e-63AB274013.1 Oryza sativa Japonica Group OsYABBY1 mRNA for OsYABBY1 protein, complete cds.
GenBankAK0700453e-63AK070045.1 Oryza sativa Japonica Group cDNA clone:J023038F18, full insert sequence.
GenBankCT8286813e-63CT828681.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA230C13, full insert sequence.
GenBankCT8286823e-63CT828682.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240F12, full insert sequence.
GenBankCT8286833e-63CT828683.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA249C03, full insert sequence.
GenBankCT8325773e-63CT832577.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z37, full insert sequence.
GenBankFJ7509323e-63FJ750932.1 Oryza sativa clone KCS005G02 MADS-box transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149388.11e-26uncharacterized protein LOC100283014
SwissprotQ7XIM72e-23YAB1_ORYSJ; Protein YABBY 1
TrEMBLA0A0D9WVP61e-25A0A0D9WVP6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0LHD21e-25A0A0E0LHD2_ORYPU; Uncharacterized protein
STRINGGRMZM2G106204_P024e-26(Zea mays)
STRINGLPERR07G03250.12e-26(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.17e-19YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ohmori Y,Abiko M,Horibata A,Hirano HY
    A transposon, Ping, is integrated into intron 4 of the DROOPING LEAF gene of rice, weakly reducing its expression and causing a mild drooping leaf phenotype.
    Plant Cell Physiol., 2008. 49(8): p. 1176-84
    [PMID:18593744]
  3. Ohmori Y,Toriba T,Nakamura H,Ichikawa H,Hirano HY
    Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice.
    Plant J., 2011. 65(1): p. 77-86
    [PMID:21175891]
  4. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  5. Tanaka W, et al.
    The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet.
    Plant Cell, 2012. 24(1): p. 80-95
    [PMID:22286138]
  6. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]