PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539852.1_FGP007
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 364aa    MW: 40043.2 Da    PI: 10.3412
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539852.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.22.4e-2211109190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 
                        +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk          +++   + + +rtgC a+l++k+    + ++vt++ 
  KN539852.1_FGP007  11 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPpqdeaaaaaSSSPPPRCPDSRTGCLASLTIKLLPsANAFRVTDFA 101
                        6*****************99997666.****************99998888776654444558899*************99899******** PP

               FAR1  83 leHnHela 90 
                         eHnH+la
  KN539852.1_FGP007 102 AEHNHPLA 109
                        ******97 PP

2FAR173.16.2e-23157256290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                        fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg +++ k++             + + r   + trtgC+a++++k +   +++v+k
  KN539852.1_FGP007 157 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKHEsiaivsnnastgpSGTPRPGPPPTRTGCQARMVIKITPCRTYRVAK 246
                        **************9976665..999**************9999999****999998877777778899*********************** PP

               FAR1  81 leleHnHela 90 
                        ++ eHnH+la
  KN539852.1_FGP007 247 FVPEHNHPLA 256
                        ********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1911109IPR004330FAR1 DNA binding domain
PfamPF031011.0E-19157256IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MYFETEEDAY EFYKAYAARL GFVVRKSNKS KNSRHTVTRR LFVCSKQGFR QEPKKPPQDE  60
AAAAASSSPP PRCPDSRTGC LASLTIKLLP SANAFRVTDF AAEHNHPLAS AAPAVSLALL  120
PPSSSHHTIA AVASLPDPRD GLRTDMHFET EDDAYAFYNR YAEHVGFSVR RSYKKRKRGV  180
IVSRIFVCSR EGVSDRAKHE SIAIVSNNAS TGPSGTPRPG PPPTRTGCQA RMVIKITPCR  240
TYRVAKFVPE HNHPLANPDS VHKLRSHKMR ARAHELGAGE LHRRKHGKGY PDIGNHVVAS  300
SSQPISFVGN QLPDHTSQAR GVPQTTNGLT SLWGISTVDE FVKSSRQLGL TSGFFVVSQM  360
QEYG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0042590.0AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0039560.0AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07.
GenBankAK1193870.0AK119387.1 Oryza sativa Japonica Group cDNA clone:001-132-C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647573.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLI1QAU30.0I1QAU3_ORYGL; Uncharacterized protein
STRINGORGLA07G0123500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-13FAR1-related sequence 5